Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0311
         (468 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    29   0.021
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   0.61 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   0.61 
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   4.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    20   9.9  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 0.021
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 96  KVEAAESNGKENGTDEAPEDSPAENGDAEESN-----DASENGDATEKKETGVKRKSV 254
           K+   +   KE   DEA E+   E G+ ++ +     D  E+ D   KKE   K+K++
Sbjct: 212 KLVVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTI 269


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 KENGTDEAPEDSPAENGDAEESNDASENGDATE 221
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.61
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 123 KENGTDEAPEDSPAENGDAEESNDASENGDATE 221
           +E G DEA  D   EN  A+E    +  GD  +
Sbjct: 21  EEEGGDEATADELCENRPADEYFRLTTEGDCRD 53


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 30  VAPEEVTSTEPKESPVKKSPAKKVEAAE 113
           VAPEE +S     S +  SPA  + + +
Sbjct: 9   VAPEESSSEVTSSSALVMSPANSLASTD 36


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 213 HHRSQMHRCFLRHHHFQQANLLG 145
           HH  + H    + HH QQ  + G
Sbjct: 169 HHMQEQHPQHHQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 213 HHRSQMHRCFLRHHHFQQANLLG 145
           HH  + H    + HH QQ  + G
Sbjct: 171 HHMQEQHPQHHQPHHQQQHMMYG 193


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 36  PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 155
           PE+ TST  + + V  + A    A  +   E     AP++
Sbjct: 438 PEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSVAPKE 477


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,337
Number of Sequences: 336
Number of extensions: 1483
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10826639
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)