Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0311
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 35 0.007
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.050
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 31 0.066
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.088
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 30 0.15
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.15
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.20
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 30 0.20
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.27
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.27
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 29 0.27
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.35
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.47
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.47
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.47
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 28 0.82
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 1.1
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 1.9
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 1.9
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 27 1.9
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 2.5
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 2.5
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 26 2.5
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 26 3.3
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 3.3
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 3.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 4.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 4.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 4.4
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 4.4
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 4.4
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 4.4
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar... 25 4.4
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 4.4
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 4.4
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.8
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 5.8
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 5.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 5.8
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 5.8
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 5.8
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 7.6
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 25 7.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.6
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.7 bits (76), Expect = 0.007
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 EEVTSTEPKESPV---KKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 209
+ +S EP + V KKS K+ ++ES + + ++ S +E+ +E + +SE+
Sbjct: 59 KRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESS 118
Query: 210 DATEKKETGVK 242
+ ++E VK
Sbjct: 119 SSESEEEVIVK 129
Score = 32.3 bits (70), Expect = 0.038
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 9 AAVDXKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 188
A V +E S+ S +S + E+ E T+E E S + D+E S
Sbjct: 152 AVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESS 211
Query: 189 ND-ASENGDATEKKET 233
+D +SE+GD+ ++
Sbjct: 212 SDSSSESGDSDSSSDS 227
Score = 28.3 bits (60), Expect = 0.62
Identities = 18/75 (24%), Positives = 36/75 (48%)
Frame = +3
Query: 27 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 206
E E V TE K+ +S + E++ + E+G ++ DS +E+ +E +E
Sbjct: 185 EEEEEVVEKTEEKKEGSSESSSDS-ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE- 242
Query: 207 GDATEKKETGVKRKS 251
A+E++ + + S
Sbjct: 243 -PASEERPAKITKPS 256
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 31.9 bits (69), Expect = 0.050
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +3
Query: 39 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDAT 218
E +S+E +S S ++ +++ + + + ++ +DS +++ D+ ES +SE+ D+T
Sbjct: 244 ESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDS-ESESSSEDSDST 302
Score = 29.9 bits (64), Expect = 0.20
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 48 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 227
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 192
Query: 228 ET 233
+
Sbjct: 193 SS 194
Score = 29.9 bits (64), Expect = 0.20
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +3
Query: 48 TSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKK 227
+ +E + S + +ES G+D + S +E+ + E ND+S + +E +
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESE 246
Query: 228 ET 233
+
Sbjct: 247 SS 248
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 31.5 bits (68), Expect = 0.066
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 69 SPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 215
+P+K+ PAK ++ + A SPA NG N+AS + A
Sbjct: 113 TPLKRGPAKGFNRNADEKQKRASGSAKSSSPAVNGSVFSGNEASPSSRA 161
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.088
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 24 KEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN-GDAEESNDAS 200
++V ++TS EPK + KSP +K + ++ T++ DS +N ++S DA
Sbjct: 973 EQVDSAQLTS-EPKSESLPKSPEEKSDDTSNDVTTENTNDINGDSNMDNVATVDKSTDAV 1031
Query: 201 ENGDAT 218
+ AT
Sbjct: 1032 DTSTAT 1037
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 30.3 bits (65), Expect = 0.15
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 102 EAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
E++E + ++N TDEA ED+ + D + S + D
Sbjct: 355 ESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSD 391
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.15
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 63 KESPVKKSPAK-KVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGV 239
K PV++ P K + ++ NG+E T + E++ + G ++E N+A+ + + GV
Sbjct: 123 KARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDE-NEANTATAPSSNEANGV 181
Query: 240 KRK 248
+K
Sbjct: 182 DKK 184
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.9 bits (64), Expect = 0.20
Identities = 22/76 (28%), Positives = 28/76 (36%)
Frame = +3
Query: 27 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASEN 206
E +P S + + K K + E KE EA EE A N
Sbjct: 374 ESSPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEVAENN 433
Query: 207 GDATEKKETGVKRKSV 254
TEKKET +K +V
Sbjct: 434 EVVTEKKETDIKSDAV 449
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 29.9 bits (64), Expect = 0.20
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 287 EWSFLLFLHQEHRFPLHTSLFLFCGITVLRCIVAFFGITIFS 162
E F++ L FP+ +F FC + IV+ G+TIF+
Sbjct: 385 EARFIMTLFYVWGFPIGIFMFAFCSKVHIHYIVSLIGLTIFN 426
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.5 bits (63), Expect = 0.27
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +3
Query: 45 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 224
V ++E ES + S ++ E ES +DE+ +S +E+ ++EE +++ E D +E+
Sbjct: 75 VAASEDSESDSESS--EEEEETESEEDSEVSDESESESESES-ESEEESESEEESDESER 131
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 29.5 bits (63), Expect = 0.27
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +3
Query: 45 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
+ +EP + K+ K + +E+ + G D+ E+ ++ D +E D E+ +
Sbjct: 169 IQPSEPHDVDTSKNGLSKKQHSEAQPEVQGNDDEVEEEDDDDDDEDEDEDEDEDNN 224
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.27
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +3
Query: 39 EEVTSTEPKESPVKKSPAKKVEA--AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
+E + KES K++PA+K + A NG E G A + D EE N D
Sbjct: 53 DETAAPSEKESLEKQAPARKTKGKRATENGTEEGKKPAKRTRKRKE-DGEEGGKRKRNQD 111
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 29.1 bits (62), Expect = 0.35
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 27 EVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEE 185
++ PE+ + + PVKK P+KK + A++N E DE + E D+E+
Sbjct: 58 DLKPED-DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEE-DSEK 108
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 28.7 bits (61), Expect = 0.47
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 81 KSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKR 245
K P+ K + S+ +NG+D DS + N SN +EN +A ++K + R
Sbjct: 963 KDPSPKSASESSSFYQNGSDIDDNDSNSSN----TSNHTTENANAQQRKLEDLNR 1013
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 28.7 bits (61), Expect = 0.47
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 42 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENG 209
EV++ EP+ PVK+ V ++ G+ + TD +P E + S + E G
Sbjct: 389 EVSANEPQPRPVKED----VPKSQVGGETDTTDVINNSTPKEETEESPSTELPETG 440
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.47
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 51 STEPKESPVKKSPAKKVE-----AAESNGKENGTDEAPEDSPAENGDAEESNDASENGDA 215
S P++SPV+ V+ +ESN K +GT+ + +P NG+ EE N+ G
Sbjct: 175 SFAPQKSPVENETETNVDNGDTKISESNEK-SGTEVEQQSAPNSNGN-EEVNNLEPVGQN 232
Query: 216 TEKKE 230
K+E
Sbjct: 233 ESKQE 237
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.9 bits (59), Expect = 0.82
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 123 KENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVLL 260
+EN +D E+S + AE A E TE++E K++ + L
Sbjct: 625 EENSSDNEMEESSGSSVTAENEESADEVDFQTEREENARKKEELRL 670
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 36 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEES 188
PE ++PKES ++ P+K+ E + + +E + +N EE+
Sbjct: 430 PEAQPVSKPKESAEEQKPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEET 480
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/64 (23%), Positives = 34/64 (53%)
Frame = +3
Query: 57 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 236
E +S + S + +A S+ +E ++E ED+ E+G +E + E+G+ ++ E
Sbjct: 939 EGDDSVEEVSEYEASDADPSDEEEEESEEYSEDASEEDGYSESEVEDEESGEDWDELERK 998
Query: 237 VKRK 248
+++
Sbjct: 999 ARQE 1002
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +3
Query: 108 AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
+ES ++ DE E+ EN D + D +EN +
Sbjct: 241 SESYERDEDVDEEEEEDDDENNDEGDDEDENENDE 275
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 99 VEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKE 230
VE + NG + + ++ +DS ++ + ESND S + DA + +
Sbjct: 372 VEEIKKNGIQEDS-QSTDDSSKDDDNNSESNDMSPHNDAETRAD 414
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 45 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASE---NGDA 215
+ ++ K SPV + A +N + + +SP + EE+N A + A
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANKQAKEMESKMSNSPTQKSKTEENNQAVRAILDASA 586
Query: 216 TEKKETGVKR 245
T +K+ + R
Sbjct: 587 TMEKQYDLHR 596
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +3
Query: 30 VAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 191
VAP +TS + V KS VE+ +++ T PED P+ ++N
Sbjct: 288 VAPSFITSDQAATPDVLKSEEAHVESFSKESEKDQT-PIPEDVPSPMDTLSQAN 340
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 233 SLFLFCGITVLRCIVAFF-GITIFSRRIFWGFIGTILFA 120
++F + C+ FF G TI+ +F G +GT L A
Sbjct: 356 AVFFIFSLFFFLCMRNFFPGFTIYFPALFLGVVGTFLIA 394
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 3.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 141 EAPEDSPAENGDAEESNDASENGDATEK 224
E PEDS E+G +E + D SE+G+ E+
Sbjct: 235 EPPEDS--EDGISEMNEDPSESGEMIEQ 260
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 3.3
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Frame = +3
Query: 63 KESPVKKSPAKKVEAAESNGKENG-------TDEAPEDSPAENGDAEESNDA-SENGDAT 218
K +PV A VE AE NG E+ + E ED A+ + +A E +
Sbjct: 403 KPAPVVAPAAPTVE-AEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKK 461
Query: 219 EKKETGVKRK 248
EKKE K+K
Sbjct: 462 EKKEKKEKKK 471
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.3
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +3
Query: 60 PKES-PVKKSPAKKVEAAESNGKENGTDEAPEDSPAENG-DAEESNDASENGDAT-EKKE 230
PK S P +PA V A +S NG E+ ENG D SND+ +G E+ E
Sbjct: 396 PKSSFPTSSTPAS-VGAEKSEETSNGNKSEQEEK--ENGNDETRSNDSLVSGKGKGEENE 452
Query: 231 TGV 239
V
Sbjct: 453 DSV 455
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 4.4
Identities = 21/73 (28%), Positives = 30/73 (41%)
Frame = +3
Query: 33 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
A EE + SP + S K + E + ENG + +N D E DA NG
Sbjct: 144 ADEEGSEISVPSSPKRMSFNLKEDMEEGDFDENG------NFIRKNYDPESQYDAWLNGS 197
Query: 213 ATEKKETGVKRKS 251
+ KK R++
Sbjct: 198 VSNKKSIAAAREA 210
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 63 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 191
+E +S + EA E NG + S EN D+EE N
Sbjct: 3939 EEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEEN 3981
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 4.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 156 SPAENGDAEESNDASENGDAT 218
SP NGD E +ENG+ T
Sbjct: 9 SPTTNGDKNEDGYPAENGEGT 29
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 4.4
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +3
Query: 36 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE---NGDAEESND-ASE 203
P E +TE + + +S + ++ S + D DSP + N + +D SE
Sbjct: 351 PSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410
Query: 204 NG 209
NG
Sbjct: 411 NG 412
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = +3
Query: 9 AAVDXKEVAPEEVTSTEPKESPV----KKSPAKKVEAAESNGKENGTDEAPEDSPAENGD 176
A VD +E+ EE + PV K S +K S K + EDS GD
Sbjct: 75 AQVDEEELEEEEEEEEDATPEPVVTSKKNSRSKPKNGGASKRKASRRTVVDEDSENLEGD 134
Query: 177 AEESN 191
E+ +
Sbjct: 135 EEDGS 139
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 4.4
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = -1
Query: 213 HHRSQMHRCFLR--HHHFQQANLLGL--HRYHSL-CHY 115
HH SQ ++C LR HH N +G H++ L C Y
Sbjct: 111 HHCSQCNKCILRMDHHCMWFKNCVGFRNHKFFFLECFY 148
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 63 KESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESND 194
KE ++ AKK+ ES K+ A + + + A+E ND
Sbjct: 41 KEKAKARAEAKKLAKKESKAKQESKVAAYDTGNSSDNIADEEND 84
>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 150 EDSPAENGDAEESNDASENGDATEKKETGVKRKS 251
E+ E+ E NDA+E G + +K+ K+KS
Sbjct: 22 ENDVVEDDGKVEENDAAEEGASNGEKKKKKKKKS 55
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 4.4
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 75 VKKSPAKKVEAAESNGKE--NGTDEAPEDSPAENGDAEESNDASENGDATEKKETG 236
++K+ AKK E G DE P + + G+A + N+ E + KK+ G
Sbjct: 103 LEKAYAKKYAPIFKRRSEVVRGADE-PTEEEIKKGEAADENEKKEPTSSESKKQEG 157
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 57 EPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAEN 170
E +ESP+K P KK + E T + SP E+
Sbjct: 892 ETRESPMKNKPTKKQHKRAFSMFERPTSQKAPLSPVES 929
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/76 (21%), Positives = 32/76 (42%)
Frame = +3
Query: 12 AVDXKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESN 191
++D + P+ + + KS ESNGK NG D+ + +++G + +
Sbjct: 33 SLDGMSIMPQRDGNLQIPNFVKPKSTFATSNIGESNGKRNG-DKVRGNRRSKSGHSSYAG 91
Query: 192 DASENGDATEKKETGV 239
G++ +GV
Sbjct: 92 SRISGGNSNSHLPSGV 107
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 365 ICFGLLQCIKCPLEFQLNIHIFRSYKCIHP 454
+C ++C C L L+ H+ RSY + P
Sbjct: 318 VCTLPIECPSCSLVLILSTHLARSYHHLFP 347
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 5.8
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = +3
Query: 39 EEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAE----NGDAEESNDASE 203
EEV +K+ A + KEN D+ P + AE NG EE SE
Sbjct: 501 EEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQVSE 559
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/62 (22%), Positives = 22/62 (35%)
Frame = +3
Query: 45 VTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEK 224
+ P +P + SP KK E + T+E P E A + + + T
Sbjct: 68 IVENVPVWNPNRTSPVKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSNLTSN 127
Query: 225 KE 230
E
Sbjct: 128 SE 129
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 12 AVDXKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 155
++D +P ++S K SP K+ +K ++A + TDE P D
Sbjct: 592 SLDENVNSPTSISSPSSKSSPFTKTTSKDTKSATT------TDERPSD 633
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = +3
Query: 84 SPAKKVEAAESNGKENGTDEAPEDSPAENGDAEESNDASENGDATEKKETGVKRKSVL 257
+P K+ E AE+ +D + DAEE S+ +K++ KRK+ L
Sbjct: 3 NPKKRAEKAEA------AKSRKQDEEKKKKDAEEDEKWSKGVKTNKKEQEAEKRKAAL 54
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 24.6 bits (51), Expect = 7.6
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Frame = +3
Query: 36 PEEVTSTEPKESPVKKSPA---KKVEAAESN-----------GKEN---GTDEAPEDSPA 164
P ++ S+ PK+ V++SPA + + A + N G++N T P S
Sbjct: 188 PSKIPSSTPKDDNVQESPAFPDENITALQKNVANFTSIKDSGGRDNLYIQTISKPRRSYV 247
Query: 165 ENGDAEESNDASENGDATEKKET 233
+N +E++ S+ E+K+T
Sbjct: 248 QNNKSEQTIKPSKQNKQKEEKKT 270
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 36 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPED 155
PEE + KE ++SP+K +E E + + +E P D
Sbjct: 34 PEEQEKKDEKEDDKEESPSKSLE--EISQSVSPVEEEPRD 71
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 24.6 bits (51), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 18 DXKEVAPEEVTSTEPKESPVKKSP 89
+ K P+ V STEP V+KSP
Sbjct: 314 EFKLFLPDNVDSTEPSTPNVQKSP 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,578
Number of Sequences: 5004
Number of extensions: 24343
Number of successful extensions: 188
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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