Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0311
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   5.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.6  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = -1

Query: 210 HRSQMHR--CFLRHHHFQQANLLGLHRYHSL 124
           H+ Q+ R   FLR    Q  N  GLH  H L
Sbjct: 110 HKEQLSREQRFLRRRLEQLTNQTGLHGLHGL 140


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +3

Query: 33  APEEVTSTEPKESPVKKSPAKKVEAAESNGKENG 134
           +P    ++ P  S     PAK   AA    K NG
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNG 545


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = +3

Query: 108 AESNGKENGTDEAPEDSPAENGDAEESNDASENGD 212
           A +N   N  +    +   +NG+   +++ + NGD
Sbjct: 237 ASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 111 ESNGKENGTDEAPEDSPAENGDAEESNDASENGD-ATEKKETG 236
           +++ K+NG  +          +  + ND  +NG+   + K  G
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG 517


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 343 CLKSPKLYMLWF 378
           CL SPK+Y++ F
Sbjct: 754 CLYSPKIYIILF 765


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 343 CLKSPKLYMLWF 378
           CL SPK+Y++ F
Sbjct: 844 CLYSPKIYIILF 855


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 131 ILFAITFCSFNFLSWRLL 78
           I+F + F  FN L W  +
Sbjct: 450 IVFPVAFIIFNILYWSFI 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,731
Number of Sequences: 438
Number of extensions: 1580
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)