Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0308
         (403 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   3.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   3.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   7.9  

>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 162 MIKTSLVRFXCYFYKIRFECLFFQNL 85
           ++K  LVR+     ++RF+  FF+ L
Sbjct: 168 VVKMLLVRYRNLTKQLRFKLRFFEKL 193


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 162 MIKTSLVRFXCYFYKIRFECLFFQNL 85
           ++K  LVR+     ++RF+  FF+ L
Sbjct: 168 VVKMLLVRYRNLTKQLRFKLRFFEKL 193


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.2 bits (40), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 203 ASAKSDEIPKGPKVT 247
           A+ KSDEIP  P  T
Sbjct: 384 AALKSDEIPPEPVPT 398


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,466
Number of Sequences: 336
Number of extensions: 1402
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8646818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)