Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0308
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    49   3e-07
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   5.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   5.8  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    24   7.7  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    24   7.7  

>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 22/44 (50%), Positives = 28/44 (63%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
           FD++ GD+  G + IGLFGKTVP T  NF  LA    G G +G+
Sbjct: 31  FDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGS 74


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +1

Query: 172 YNGFRNFVVHR*CQI**NSQRT*SYS*GSFDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQ 351
           +NGF  F  H+ C++  N  R  ++    +     D +    V+ L   +   T  NF +
Sbjct: 56  HNGFWRFGRHKSCEVVLNGPRVSNFHFEIYQGHRNDSDESENVVFLHDHSSNGTFLNFER 115

Query: 352 LA 357
           LA
Sbjct: 116 LA 117


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 293 VPVLSSPIFMSKLPY 249
           VP++S+P+F S  PY
Sbjct: 355 VPIISNPLFKSPAPY 369


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 201 SLVPNLMKFPKDLKLLIRE 257
           S+VPN++K P ++ L+I E
Sbjct: 107 SVVPNILKLPDEVLLVILE 125


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 84  RYKIRNLI*KPSQFTILLIRNNHTSCR 4
           ++KIRN+I K S  T+ ++++  T  R
Sbjct: 29  QFKIRNVIGKGSWSTVFVVKHRQTKQR 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,350
Number of Sequences: 5004
Number of extensions: 24757
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)