Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0308
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    48   2e-06
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589...    44   5e-05
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15...    43   1e-04
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515...    42   2e-04
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558...    41   3e-04
09_06_0359 + 22508900-22509439                                         38   0.004
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     27   7.3  

>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 48.4 bits (110), Expect = 2e-06
 Identities = 22/45 (48%), Positives = 27/45 (60%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
           FD+++G +  G IVIGLFG+ VP T  NF  L     G G KG S
Sbjct: 70  FDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKGYGYKGCS 114


>06_03_1341 +
           29458085-29458198,29458448-29458526,29458923-29458970,
           29459064-29459087,29459554-29459736,29459845-29459920,
           29460020-29460158
          Length = 220

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/43 (46%), Positives = 24/43 (55%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
           FD++I     G +V+GLFGKTVP T  NF  L     G G  G
Sbjct: 55  FDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSG 97


>05_01_0022 +
           154399-154428,154528-154716,155469-155619,155724-155812,
           156391-156445,156533-156618,156705-156857
          Length = 250

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +1

Query: 259 FDMKIGDD---NTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
           FD+ IG+    N G +VIGL+G  VP T  NF  L     G G KG+S
Sbjct: 87  FDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSS 134


>09_06_0098 +
           20850535-20850612,20851258-20851333,20851474-20851521,
           20851758-20851781,20851875-20851994,20852235-20852310,
           20852385-20852547
          Length = 194

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = +1

Query: 262 DMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
           D++I   + G IVIGL+G  VP T  NF  L     G G KG S
Sbjct: 43  DVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKS 86


>06_03_1340 +
           29455210-29455290,29455493-29455571,29455767-29455814,
           29455908-29455931,29456433-29456615,29456730-29456805,
           29456937-29457072
          Length = 208

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
           FD+ I     G IV+GLFG TVP T  NF  +     G G  G
Sbjct: 44  FDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSG 86


>09_06_0359 + 22508900-22509439
          Length = 179

 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
           FD+ IG    G +V+ LF  TVP T  NF  L     G G+ G
Sbjct: 10  FDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASG 52


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 285 IVITNLHVKAPL*VTLGPLGISSDLALAMNN---KIPKAIVRVPMIK 154
           +++TN  +   +   LG L   S L +A NN    IP +I ++P ++
Sbjct: 309 VILTNNTIFGGIPAALGNLSSLSSLLVAQNNLQGNIPDSITKIPYLQ 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,611
Number of Sequences: 37544
Number of extensions: 128814
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)