Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0308
         (403 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   4e-04
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               37   0.005
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   4.3  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 40.7 bits (91), Expect = 4e-04
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 262 DMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSK 384
           D+ IG    G +++GLFG T P T  NF  LA    G G K
Sbjct: 31  DVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYK 71


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +1

Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
           FD+ IG+ + G IV+ L    VP T  NF  L     G G KG+S
Sbjct: 141 FDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSS 185


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 246 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 145
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 246 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 145
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,916,589
Number of Sequences: 59808
Number of extensions: 153482
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)