Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0308
(403 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical pr... 55 2e-08
U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin iso... 55 2e-08
U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin pro... 48 3e-06
U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin pro... 48 3e-06
U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1 p... 38 0.003
AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical ... 38 0.003
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 27 6.7
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 26 8.8
AF047657-11|AAK18942.1| 356|Caenorhabditis elegans Serpentine r... 26 8.8
>Z92784-1|CAB07192.1| 204|Caenorhabditis elegans Hypothetical
protein F31C3.1 protein.
Length = 204
Score = 54.8 bits (126), Expect = 2e-08
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
FDM+IG G IVIGLFGKTVP T NF +LA P G G G+
Sbjct: 33 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGS 76
>U31948-1|AAC47126.1| 204|Caenorhabditis elegans cyclophilin
isoform 5 protein.
Length = 204
Score = 54.8 bits (126), Expect = 2e-08
Identities = 26/44 (59%), Positives = 29/44 (65%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
FDM+IG G IVIGLFGKTVP T NF +LA P G G G+
Sbjct: 33 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGS 76
>U27354-1|AAC47124.1| 201|Caenorhabditis elegans cyclophilin
protein.
Length = 201
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
FDM+IG G IVIGLFG+ VP T NF +LA G G G+
Sbjct: 30 FDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGS 73
>U00051-7|AAA91355.1| 201|Caenorhabditis elegans Cyclophylin
protein 6 protein.
Length = 201
Score = 47.6 bits (108), Expect = 3e-06
Identities = 23/44 (52%), Positives = 27/44 (61%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
FDM+IG G IVIGLFG+ VP T NF +LA G G G+
Sbjct: 30 FDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGS 73
>U30943-1|AAC47116.1| 192|Caenorhabditis elegans cyclophilin-1
protein.
Length = 192
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
FD+ IG++ G + + LF VP T NF L G G +G +
Sbjct: 26 FDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVA 70
>AL033512-4|CAA22075.1| 192|Caenorhabditis elegans Hypothetical
protein Y49A3A.5 protein.
Length = 192
Score = 37.9 bits (84), Expect = 0.003
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
FD+ IG++ G + + LF VP T NF L G G +G +
Sbjct: 26 FDVSIGEEPAGRVTMELFNDVVPKTAENFRALCTGEKGVGEQGVA 70
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = +2
Query: 137 KRTKLVLIMGTLTMALGILLFIASAKSDEIPKGPKVTHKG 256
++T + + G++ +A+G + +ASA +D + + PK + G
Sbjct: 129 QKTYCLDVTGSMMVAVGKITLLASAITDGMGRDPKALNSG 168
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +1
Query: 265 MKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGA 390
+KIG G IVI L P T NF L G G +G+
Sbjct: 145 VKIGIRYIGRIVIELRTDVTPKTAENFRCLCTGERGFGYEGS 186
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = -1
Query: 124 LQNSFRMFIFSKFTI*DKKFDLKTKPIYYFTD*EQPHLVPN 2
L+N FI S + DK LK P YYF + P +V N
Sbjct: 332 LENDVLYFISSIRYLMDKNISLKNIPHYYFQN--YPQIVSN 370
>AF047657-11|AAK18942.1| 356|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 24 protein.
Length = 356
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/77 (22%), Positives = 32/77 (41%)
Frame = -2
Query: 276 TNLHVKAPL*VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSLVRFXCYFYKIRFECLF 97
TN+ + + +T+ S L ++N PK ++ +P + +V YFY +
Sbjct: 160 TNILIPVAI-ITMSQFFAISLTVLLISNIFPKLVLTLPWVACFVVSIFMYFYIREINTKW 218
Query: 96 FQNLRYKIRNLI*KPSQ 46
Q + R + SQ
Sbjct: 219 LQEMENPRRTRVFTVSQ 235
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,697,900
Number of Sequences: 27780
Number of extensions: 131951
Number of successful extensions: 259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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