Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0308
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 44 3e-05
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 44 3e-05
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 44 3e-05
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 41 3e-04
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 38 0.002
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 38 0.003
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 36 0.010
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 32 0.16
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 31 0.29
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 29 1.2
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 26 8.2
At4g10770.1 68417.m01757 oligopeptide transporter OPT family pro... 26 8.2
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/43 (48%), Positives = 24/43 (55%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FD++I G IV+GLFGKTVP T NF L G G G
Sbjct: 39 FDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNG 81
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
FD++IG + G IV+GLFG+ VP T NF L G KG+S
Sbjct: 99 FDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSS 143
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FD++I + G +VIGLFGK VP T NF L G G G
Sbjct: 36 FDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSG 78
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FD++I G I+IGLFG VP T NF L G G+ G
Sbjct: 63 FDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNMG 105
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FDM +G + G IV+ L+ T P T NF L G G +G
Sbjct: 9 FDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQG 51
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 37.9 bits (84), Expect = 0.003
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +1
Query: 259 FDMKIGDDN---TGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKGAS 393
FD+ +G+ G IVIGL+G VP T NF L G G KG++
Sbjct: 94 FDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGST 141
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 35.9 bits (79), Expect = 0.010
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +1
Query: 262 DMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
D+ I G IVIGL+G VP T NF L G S G
Sbjct: 52 DVDIDGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSG 93
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 31.9 bits (69), Expect = 0.16
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FDM + G I + LF T P T NF L G G G
Sbjct: 8 FDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLG 50
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 31.1 bits (67), Expect = 0.29
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +1
Query: 259 FDMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXGXGSKG 387
FD+ + G IVI LF P T NF L G G G
Sbjct: 8 FDLTVDGKPAGRIVIELFADLTPRTAENFRGLCTGERGIGKCG 50
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 262 DMKIGDDNTGTIVIGLFGKTVPXTTXNFXQLAXXPXG 372
D+ I + G I+IGL+G VP T F + G
Sbjct: 97 DVSIDGEPIGRIIIGLYGDDVPAGTARFSSIVSGKAG 133
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 289 GTIVIGLFGKTVPXTTXNFXQL 354
G +V+GL+G+ VP T F ++
Sbjct: 86 GRVVLGLYGRHVPITVSTFKRM 107
>At4g10770.1 68417.m01757 oligopeptide transporter OPT family
protein similar to oligopeptide transporter Opt1p
[Candida albicans] GI:2367386; contains Pfam profile
PF03169: OPT oligopeptide transporter protein
Length = 766
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 315 SK*SNHNSTSIVITNLHVKAPL*VTLGPLGISSDLALA 202
S+ S +N TSI+ +N H+ P GPL + + A++
Sbjct: 360 SQGSKYNITSIIDSNFHLDLPAYERQGPLYLCTFFAIS 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,938
Number of Sequences: 28952
Number of extensions: 120178
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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