Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0307
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.1
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.8
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.8
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 26 5.0
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 25 6.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.5
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 6.5
>SPAC9.02c |||N-acetyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 165
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 371 KCYHEKDPKHA-LFL*THNPTQPFHTSLVLK*LG 469
+C H PK + + L +H P PF+ SL K LG
Sbjct: 114 RCQHTITPKPSRMILISHKPLVPFYESLGFKNLG 147
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 370 EMLPRERPEARSFLVNT*SNPTVPYLISVKIARTCLSRRYHDYI 501
E + R + + SF+ N + L VKIA T +S+ Y DY+
Sbjct: 558 EYVKRFKEDHFSFMFKKEENYAIITLSLVKIASTPMSKLYEDYL 601
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 274 HFSQSDVFLNFPSLVISCDLISIHRAYFFNGSFSVL 167
HFS++ + FP+L++ C + R + + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 12 IMKTFIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGD-FKTENEPL 188
I+ TF++FVV ++L + L ++ K+ + + + E KL GD F+ P+
Sbjct: 274 IIDTFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 2.8
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -1
Query: 315 SISFSTFNLSSALGTLARATSS*ISRPWSSAVI*SAYIEHTSSMVRFQS*-SRLSSVCSP 139
S S ST + S + SS S P SS+ S+ I SS + S S SSV S
Sbjct: 520 STSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSI 579
Query: 138 IVHQLSSRRDSRLCVSSSSPSA 73
+ SS + L +SSSS S+
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSS 601
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 48 VLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYA 200
V + +TD N+ + L E + + ++K KT DFK + + YA
Sbjct: 621 VASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYA 671
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 24 FIVFVVCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFK 170
F+V V V A LTDE+K L K R + S + E+L K FK
Sbjct: 238 FLVLPVSVETANFLTDEEK-TLAKMRIENDSSSAISEKLSFKQSLTVFK 285
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 6.5
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = -1
Query: 318 ASISFSTFNLSSALGTLARATSS*ISRPWS-SAVI*SAYIEHTSSMVRFQS*SRLSSVCS 142
+S S ST + SS+ ++ ++SS S P S S+ I S+ +S + S SS S
Sbjct: 256 SSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS 315
Query: 141 PIVHQLSSRRDSRLCVSSSSPSA 73
LSS S SSSP++
Sbjct: 316 SFSSTLSSSSMSSSSSFSSSPTS 338
Score = 25.0 bits (52), Expect = 8.7
Identities = 27/82 (32%), Positives = 36/82 (43%)
Frame = -1
Query: 318 ASISFSTFNLSSALGTLARATSS*ISRPWSSAVI*SAYIEHTSSMVRFQS*SRLSSVCSP 139
+S S STF+ ++ T + SS SS+ S+ TSS + S SS S
Sbjct: 190 SSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSS 249
Query: 138 IVHQLSSRRDSRLCVSSSSPSA 73
LSS S SSSS S+
Sbjct: 250 TSSSLSSSSSSSTASSSSSSSS 271
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 206 YADQITADDQGREIQEDVALAKVPNAEDKLKVEKLIDAC 322
Y D+ R + DV+LA++ + D K+ ++D C
Sbjct: 374 YLDENAGKLSNRMKRGDVSLAQISSGGDLKKINHVLDTC 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,225
Number of Sequences: 5004
Number of extensions: 50545
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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