Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0307
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   2.9  
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292...    29   2.9  
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    28   5.0  
02_03_0029 - 14077737-14077794,14077920-14078051,14078264-140783...    28   5.0  
08_01_1072 + 10954080-10954851,10954956-10955027,10955108-109551...    28   6.7  

>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 17  EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 124
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>02_01_0401 +
           2927581-2927669,2927795-2927921,2928354-2928437,
           2928546-2928662,2928754-2928945,2929031-2929234,
           2929322-2929809,2930429-2930528,2930686-2930745,
           2931007-2931126,2931407-2931751
          Length = 641

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = +2

Query: 137 IGEQTEDRRL*D*KRTIEEVCSMYADQITADDQGREIQEDVALAKVPNAEDKL------- 295
           +GE  E+R++    R  E+   +  +++    +  E+QE  +  K    ++K+       
Sbjct: 236 VGEDPEERQMVSLNRLFEKHRDVSLNRLLEKHRDEEMQESCSTDKEGEEDEKIDTLSFEQ 295

Query: 296 KVEKLIDACLANKGNSPHQTAWNYVKC 376
            + K+    L N  N+P+Q +   V+C
Sbjct: 296 SILKITSMKLGNLWNNPNQLSEEMVRC 322


>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 176 KRTIEEVCSMYADQITADDQGREIQEDVALAKVPNAEDKL 295
           K T+EE+ S+Y ++   DD+  E QE +   +V     KL
Sbjct: 295 KETMEEIESLYDEESRLDDEIMEAQEKLNALRVDEDRRKL 334


>02_03_0029 -
           14077737-14077794,14077920-14078051,14078264-14078385,
           14078462-14078569,14079410-14079565,14080302-14080480,
           14081247-14081268
          Length = 258

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +1

Query: 301 READ*RLPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVPYLISVKIARTCLS 480
           R+AD  L G   QQ  P  + L  +      EARS  +   +NP V + +   +     S
Sbjct: 181 RDADYPLVGNHFQQNRPQDVVLFIVGGTTYEEARSVALYNAANPGVRFFLGGSVVLN--S 238

Query: 481 RRYHDYIGE 507
           +R+ D +GE
Sbjct: 239 KRFLDDLGE 247


>08_01_1072 +
           10954080-10954851,10954956-10955027,10955108-10955191,
           10955285-10955353,10955814-10955916,10956033-10956107,
           10956204-10956366,10956502-10956571,10956649-10956735,
           10956795-10956836,10956904-10956969,10957201-10957275,
           10960149-10960271,10960683-10960966
          Length = 694

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 212 DQITADDQGREIQEDVALAKVPNAEDKLKVEK---LIDACLANKGNSPHQTAWNYVKCYH 382
           ++   ++   E++E++        E+K  +++    ID   A K  +PHQ  +  ++C H
Sbjct: 168 EETEEEEDEEELEEELEAEDEEEEEEKEVLDQDHMAIDDDEAAKSTAPHQGKYQLLQCCH 227

Query: 383 EKD 391
            +D
Sbjct: 228 HQD 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,278,156
Number of Sequences: 37544
Number of extensions: 308661
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)