Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0305
         (500 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    25   0.38 
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   3.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.2  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 409 YSNFNLYLFDKFCLVVVT 462
           YSNF+++LFD   +V +T
Sbjct: 70  YSNFSVFLFDIITIVTLT 87


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
 Frame = +1

Query: 7   EEQLV-NKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVP-----NAED 168
           EE ++ + +   D  +    LK Y  C+L K +   +  K K  +  A        N + 
Sbjct: 18  EEYVIPDNIDIDDILSNERLLKNYVNCLLDKGRCTPEGKKLKSTIPEALSTDCAKCNEKV 77

Query: 169 KLKVEKLIDACLANK 213
           K  V K++   + NK
Sbjct: 78  KANVRKVLHHLIDNK 92


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 365 IMIISENIAILYGVII 412
           IMI+  N+AI +G +I
Sbjct: 532 IMILVANVAISFGYLI 547


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 365 IMIISENIAILYGVII 412
           IMI+  N+AI +G +I
Sbjct: 532 IMILVANVAISFGYLI 547


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,273
Number of Sequences: 336
Number of extensions: 2573
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)