Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0305
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621     28   4.8  
01_06_1588 + 38474698-38477169                                         27   6.4  
12_01_0156 + 1188143-1189957                                           27   8.5  

>03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621
          Length = 140

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 391 CNILRYNHDIV*INTSELFNTNEVWNGWVGLCVYKK 284
           C I    HD+  I++S  F    +   W G+C++KK
Sbjct: 99  CYIYESKHDL--ISSSNKFGAKFLMGTWCGVCMWKK 132


>01_06_1588 + 38474698-38477169
          Length = 823

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 313 GWVGLCVYKKRACFGSFSWYISHNSRLFGEGC 218
           GW GLCVY  R        Y+  ++   G+GC
Sbjct: 295 GWNGLCVYTPRPACSCPPGYVPADAGDRGKGC 326


>12_01_0156 + 1188143-1189957
          Length = 604

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 258 GTFHIIP-GCLVRAVAFVGQASVNQLLYFQFV 166
           GTFH  P GCL+  +A   + + N+LL+F  V
Sbjct: 218 GTFHGKPSGCLMYELAHALRKNTNELLWFACV 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,754,936
Number of Sequences: 37544
Number of extensions: 252089
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)