Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0305
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)                       28   5.0  
SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 253 CTTRKTRSTLFSCKHIIQPNRSIPH*C*IARTCLSRRYHDYIGEYCNLVWCYYS 414
           CT R  R TL +C++ ++P R     C   R  LS   +     YC L  C Y+
Sbjct: 39  CTLRPCRYTLRTCRYTLRPRRYTLSPC---RYTLSPCRYTLRPRYCTLRPCRYT 89


>SB_52186| Best HMM Match : IMPDH (HMM E-Value=0)
          Length = 876

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +1

Query: 103 LMTKDGKFKKDVALAKVPNAEDKLKVEKLIDACL------ANKGNSPHQ 231
           L +KD K +  V  A    AEDKL+VE LI A +      +++GNS +Q
Sbjct: 428 LASKDSKKQLLVGAAIGTRAEDKLRVEALIHAGVDVIILDSSQGNSAYQ 476


>SB_18198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +1

Query: 118 GKFKKDVALAKVPNAEDKLKVEKLIDACLANKGN--SPHQTAWNYVKCTTRKTRSTLFSC 291
           G FKKDV +   P+AE    +EK        +G    P      YV C  R +   +  C
Sbjct: 131 GYFKKDVFMYPYPDAE---MIEKCRACGAKERGKCCCPVLEKSFYVFCRERCSPKYISEC 187

Query: 292 KHIIQPNRSIPH*C 333
           K  +    S  H C
Sbjct: 188 KRCLNMGNSSTHAC 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,350,284
Number of Sequences: 59808
Number of extensions: 312029
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)