Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0305
         (500 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical p...    30   0.82 
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical ...    27   7.6  
AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical...    27   7.6  
AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical...    27   7.6  

>Z99281-52|CAB16507.3|  512|Caenorhabditis elegans Hypothetical
           protein Y57G11C.5 protein.
          Length = 512

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 348 RPSYLTLMRYGTVGLDYVFTRKERASGLSR 259
           RPS LT   YG+ GL+  +  K R +GL+R
Sbjct: 160 RPSLLTTNGYGSAGLNATWIGKTRKAGLNR 189


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
 Frame = +1

Query: 25  KLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNA--EDKLKVEKL--- 189
           +L   +++    PL+   +C+ I   + TKD K K    L+K+ N   +DK+ V +L   
Sbjct: 61  RLFVAEWELRVNPLQLVEICISIAQNIATKD-KQKSMEFLSKIGNVINKDKIAVARLHTG 119

Query: 190 -IDACLANK 213
            I+A L NK
Sbjct: 120 EIEARLENK 128


>Z81466-6|CAB03870.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 46  KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 186
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>Z75536-5|CAA99833.1|  545|Caenorhabditis elegans Hypothetical
           protein F18C12.3 protein.
          Length = 545

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 46  KTENEPLKKYALCMLIKSQLMTKDGKFKKDVALAKVPNAEDKLKVEK 186
           K  NE +   A C+  K+QLM++  + KK +   K    + K K E+
Sbjct: 110 KLNNELVALRATCLTAKNQLMSRIVRQKKQLESKKSQKVDGKSKEER 156


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 304 GLCVYKKRACFGSFSWYISHNSRLFGEGCCL 212
           G  V+K    +G F W+  H +  F   CC+
Sbjct: 461 GRQVFKNHTIYGMFVWFQIHRASTFIGVCCI 491


>AL110499-3|CAE18038.1|  437|Caenorhabditis elegans Hypothetical
           protein Y62F5A.10 protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 130 KDVALAKVPNAEDKLKVEKLIDACLANKGNSPHQTAW 240
           +DVA+A +   +      + ID C+A K N  + T W
Sbjct: 135 EDVAVAYIGKLDASQTRPEYIDVCVATKANIENCTVW 171


>AC006674-12|AAO38617.1|  357|Caenorhabditis elegans Hypothetical
           protein K12H6.6b protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 152 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 12
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


>AC006674-11|AAF39936.1|  309|Caenorhabditis elegans Hypothetical
           protein K12H6.6a protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 152 TLARATSFLNFPSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNC 12
           T  R T  LN  +LV+   +++++  YF   SFS+  SP +   T C
Sbjct: 202 TAFRVTVILNIITLVVFRLIVNVYMIYFVFASFSM--SPWYIASTIC 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,418
Number of Sequences: 27780
Number of extensions: 242991
Number of successful extensions: 724
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)