Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0304
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0827 + 6244025-6244294                                           31   0.50 
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915...    28   3.5  
02_05_1167 - 34638709-34639104,34640653-34642158                       28   4.7  
01_01_0971 + 7669209-7669446,7671259-7671446                           28   4.7  
08_02_0439 + 17184384-17184474,17184614-17184711,17185134-171853...    27   8.2  
07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081           27   8.2  

>06_01_0827 + 6244025-6244294
          Length = 89

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 177 RKKKVAWSRARSCLLLAVNGT*VVGSCXTTPPPEP 73
           +++ VAW++A + + +A NG     S  TTPPP P
Sbjct: 53  KRELVAWAKAVASMAMAANGG-AGSSPSTTPPPSP 86


>09_02_0423 +
           9153088-9153181,9153281-9153378,9153532-9153708,
           9153827-9153927,9154334-9154490
          Length = 208

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +2

Query: 86  GVVXQEPTTQVPLTASNKHDRARDHATFFFL 178
           G     PT  VPL   N HD+AR   T  F+
Sbjct: 47  GTAVMIPTMLVPLMGGNDHDKARVVQTLLFV 77


>02_05_1167 - 34638709-34639104,34640653-34642158
          Length = 633

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 94  DHASARASFVGRQGAPRAGEVXFDSKGLA 8
           DHAS R    G    PRAGEV  + + +A
Sbjct: 20  DHASLRRLVAGLPRLPRAGEVATEEESIA 48


>01_01_0971 + 7669209-7669446,7671259-7671446
          Length = 141

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +3

Query: 6   RARPFESKXTSPARGAPCRPTNEALAEAWSXKNRQLRFH*PQATNMIERATTQLF 170
           RARP  +  + P R A C   +E  A  ++ +N Q+    P AT ++  A   +F
Sbjct: 45  RARPGVAAPSRPPRIAECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMF 99


>08_02_0439 +
           17184384-17184474,17184614-17184711,17185134-17185310,
           17185450-17185550,17186028-17186103,17186438-17186682,
           17186784-17186880,17186990-17187076,17187268-17187362,
           17187462-17187553,17187630-17187707,17187832-17187992,
           17188095-17188307
          Length = 536

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 86  GVVXQEPTTQVPLTASNKHDRARDHATFFFL 178
           G     PT  VPL   N HD+A+   T  F+
Sbjct: 46  GTAVMIPTLLVPLMGGNAHDKAKVVQTMLFV 76


>07_01_0625 + 4674661-4674843,4676120-4676671,4676947-4677081
          Length = 289

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 20/46 (43%), Positives = 24/46 (52%)
 Frame = -2

Query: 195 AKCVSKRKKKVAWSRARSCLLLAVNGT*VVGSCXTTPPPEPRSLVG 58
           AK VSK  + V+   A + LLL  N T    +  TTPPP PR   G
Sbjct: 99  AKRVSKSVQTVSLFAASASLLLFANLTAAGKAPTTTPPP-PRLPAG 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,125
Number of Sequences: 37544
Number of extensions: 164621
Number of successful extensions: 445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)