Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0304
         (493 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical ...    31   0.45 

>AF101312-4|AAC69220.1|  358|Caenorhabditis elegans Hypothetical
           protein F56E10.1 protein.
          Length = 358

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 227 RKCTQLXQXPLPNAYRKEKKKLRGRALDHVCCLRSMEPELS 105
           R   +L +  + NA  KEK++L+   + H+C + + EP  S
Sbjct: 168 RNLAKLCEKEVENADEKEKEQLKSEEIQHLCQVLAYEPNSS 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,179
Number of Sequences: 27780
Number of extensions: 138522
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)