Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0304
         (493 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21230.2 68415.m02521 bZIP family transcription factor contai...    27   5.2  
At2g21230.1 68415.m02520 bZIP family transcription factor contai...    27   5.2  
At4g24450.1 68417.m03505 starch excess protein-related similar t...    27   6.9  
At3g59650.1 68416.m06655 mitochondrial ribosomal protein L51/S25...    27   9.1  

>At2g21230.2 68415.m02521 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 460

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 PTTQVPLTASNKHDRARDHATFFFLFDT 187
           P +Q+P T   +H R+    + FF FD+
Sbjct: 62  PYSQIPATLQPRHSRSMSQPSSFFSFDS 89


>At2g21230.1 68415.m02520 bZIP family transcription factor contains
           a bZIP transcription factor basic domain signature
           (PDOC00036)
          Length = 519

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 104 PTTQVPLTASNKHDRARDHATFFFLFDT 187
           P +Q+P T   +H R+    + FF FD+
Sbjct: 62  PYSQIPATLQPRHSRSMSQPSSFFSFDS 89


>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 225 P*XVFLIXIIXVDLCVMINNNIAXILCTR 311
           P  +++I ++  +LC+ I NN   I CT+
Sbjct: 701 PEIIYVICVVLENLCLSIVNNEEIIFCTK 729


>At3g59650.1 68416.m06655 mitochondrial ribosomal protein
           L51/S25/CI-B8 family protein low similarity to
           mitochondrial ribosomal protein bMRP36a [Mus musculus]
           GI:13559406; contains Pfam profile PF05047:
           Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
          Length = 119

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 146 DHVCCLRSMEPELSVLVRPRLRQSLVR 66
           + V C+++M+PE  +L   RLR SL R
Sbjct: 67  ERVVCVKNMDPEEVLLNATRLRNSLGR 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,121,147
Number of Sequences: 28952
Number of extensions: 123883
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)