Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0300
         (527 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    39   0.002
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950...    35   0.035
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674...    30   1.3  
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677...    30   1.3  
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600...    28   4.0  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/39 (48%), Positives = 23/39 (58%)
 Frame = -3

Query: 411 SSGAVIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCF 295
           S   ++   F   GV K V+S  IG S E E+ALYTLCF
Sbjct: 404 SETQLLTIQFEWHGVLKSVSSTLIGVSPEFEVALYTLCF 442


>01_05_0274 -
           20293963-20294065,20294501-20294560,20295006-20295052,
           20296065-20296155,20296276-20296427,20296891-20297049,
           20297132-20297381,20298255-20298317,20298394-20298566
          Length = 365

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +2

Query: 341 MNIELTGLSTPCWXKWNLITAPLL----PKLSVFQVT*VIXSVRCFFL 472
           + I LT LST CW  W ++  P+L     KL    +  V  +++CFF+
Sbjct: 143 LGIFLTTLSTTCWALWTVLQGPMLEVYPSKLLNTTIQIVFATIQCFFI 190


>11_06_0618 +
           25565780-25566064,25566855-25567046,25567144-25567416,
           25567636-25567738,25568273-25568391,25568615-25568782,
           25568908-25569386,25569742-25569850,25569905-25570070,
           25571405-25571433
          Length = 640

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 TSPNKEWTSRLTLCSLVHHXSWKWHCILC 300
           T  N++W    T+C L+H+    +H I C
Sbjct: 605 TGGNQKWLGNFTICHLIHNPITIYHSIRC 633


>02_02_0099 +
           6768115-6768285,6769950-6770034,6770501-6770628,
           6771429-6771465,6773108-6774193,6774337-6774447,
           6774701-6774817,6774818-6775120,6776092-6776513,
           6776645-6777274
          Length = 1029

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 224 ESVSHDTDIVVDSFRLHSLSARVTKHKVYNAISNS--XDVPMNIELTGLSTP 373
           ES SHDT IVV +   H+L  +    K   AI ++   + P +IE   +S P
Sbjct: 414 ESSSHDTSIVVSTHN-HTLDVKGCSDKELEAIESAVLVEEPSSIEDNNISAP 464


>10_08_0682 +
           19858131-19858230,19858313-19858954,19859041-19860016,
           19860105-19860147
          Length = 586

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 375 QGV-DKPVNSMFIGTSXELEMALYTLCFVTRADS 277
           QGV D P+NS+FI +   +E++L  +  +TR+ S
Sbjct: 320 QGVADNPMNSVFIPSPVPVELSLVQVVGITRSGS 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,412
Number of Sequences: 37544
Number of extensions: 201891
Number of successful extensions: 379
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)