Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0300
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022) 46 1e-05
SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3) 44 8e-05
SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_58929| Best HMM Match : Halo_GVPC (HMM E-Value=0.67) 29 3.1
SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2) 27 7.2
SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7) 27 9.6
SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_3909| Best HMM Match : Collagen (HMM E-Value=0.0013) 27 9.6
>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
Length = 616
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = -3
Query: 519 KKMASFWYYIIGFIFQRKKQRTDXIT*VT*NTDNLGSSGAVIKFHFXQQGVDKPVNSMFI 340
KK+ ++ + F Q K++ D +T S +K F DK V+S F+
Sbjct: 42 KKIVKGYHSWLQFYLQEKRRDADYHGYYALST----SEPRGLKLKFDVNNYDKVVSSFFL 97
Query: 339 GTSXELEMALYTLCFVTRADSEC 271
GTS E E +LYT CF R EC
Sbjct: 98 GTSPEFEFSLYTACFYLRPGQEC 120
>SB_19356| Best HMM Match : Cucumo_2B (HMM E-Value=7.3)
Length = 194
Score = 44.0 bits (99), Expect = 8e-05
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = -3
Query: 399 VIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSEC 271
++ F + V KP+ F+GTS E E++LYT CF+ + +C
Sbjct: 123 IVTARFKYRTVQKPIGGFFVGTSPEFELSLYTTCFLKYPNGKC 165
>SB_31891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = -3
Query: 399 VIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFV 292
++ F + KP+ S FIGTS E EMALYT+CF+
Sbjct: 210 LVTIQFSWKSGVKPIGSSFIGTSPEFEMALYTVCFL 245
>SB_6487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 967
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 149 NNFTSGSDKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
N+ D LDLW AT + + V HD D++ ++ V +HKV
Sbjct: 378 NSVKHEKDVLDLWTATNNTKTDVQAQKVKHDKDVLDLWTATNNTKTEVQEHKV 430
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ V +HKV
Sbjct: 535 DVLDLWTATNNTKTDVQAHKVKHDKDVLDLWTATNNTKTDVQEHKV 580
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 317 WHCILCAS*LVLTASVT*N-CPQRCQYH-DSHFPL 219
WHC+LC++ + + +T C + +YH + H PL
Sbjct: 146 WHCVLCSTGIPPQSPLTSTICEETTEYHPEQHTPL 180
>SB_58929| Best HMM Match : Halo_GVPC (HMM E-Value=0.67)
Length = 712
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 164 GSDKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
G D LDLW AT + V HD D++ ++ V HKV
Sbjct: 382 GEDVLDLWTATNNTKTDVQAHKVKHDKDVLDLWTATNNTKTDVQAHKV 429
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ A V HKV
Sbjct: 34 DVLDLWTATNNTKTDVQAHKVQHDKDVLDLWTATNNTKADVQAHKV 79
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ A V HKV
Sbjct: 234 DVLDLWTATNNTKTDVQAHKVKHDKDVLDLWTATNNTKADVQAHKV 279
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 146 SNNFTSGSDKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
++N D LDLW AT + V HD D++ ++ V HKV
Sbjct: 301 THNVKHDQDVLDLWTATNNTKTDVQAHKVKHDQDVLDLWTATNNTKTDVQAHKV 354
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ V HKV
Sbjct: 9 DVLDLWTATNNTKIDVQAHKVKHDQDVLDLWTATNNTKTDVQAHKV 54
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + + V HD D++ ++ V HKV
Sbjct: 159 DVLDLWTATNNTKTDVQAQKVKHDKDVLDLWTATNNTKTDVQAHKV 204
>SB_51822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 164 GSDKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
G D LDLW AT + + HD D++ ++ V HKV
Sbjct: 517 GKDVLDLWTATNNTKTDVQAHKMKHDQDVLDLWTATNNTKTDVQAHKV 564
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ V HKV
Sbjct: 569 DVLDLWTATNNTKIDVQAHKVKHDQDVLDLWTATNNTKTDVQAHKV 614
>SB_47355| Best HMM Match : Halo_GVPC (HMM E-Value=3.2)
Length = 382
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +2
Query: 164 GSDKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
G D LDLW AT + + HD D++ ++ V HKV
Sbjct: 236 GKDVLDLWTATNNTKTDVQAHKMKHDQDVLDLWTATNNTKTDVQAHKV 283
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ V HKV
Sbjct: 288 DVLDLWTATNNTKIDVQAHKVKHDQDVLDLWTATNNTKTDVQAHKV 333
>SB_30204| Best HMM Match : DUF1644 (HMM E-Value=7.7)
Length = 267
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 466 EAANRLNYLGYLKYRQFGEQWSSD*IPLXPTRSGQAG 356
E +N++NY YLK R+ G +W + L P S G
Sbjct: 202 EDSNQMNYAAYLKQRKIG-RWGINDKALYPAPSRGMG 237
>SB_22532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 254 VDSFRLHSLSARVTKHKVYNAISNSXDVPMNIE 352
+ ++ S S+R+ KH ++A ++ DVP +E
Sbjct: 199 IHCYKAFSNSSRLAKHLAWHAKAHKLDVPQEVE 231
>SB_3909| Best HMM Match : Collagen (HMM E-Value=0.0013)
Length = 496
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 170 DKLDLWIATTD*IFTPVTESVSHDTDIVVDSFRLHSLSARVTKHKV 307
D LDLW AT + V HD D++ ++ V HKV
Sbjct: 156 DVLDLWTATNNTKTDVQAHKVKHDQDVLYLWTATNNTKTDVQAHKV 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,643
Number of Sequences: 59808
Number of extensions: 247693
Number of successful extensions: 496
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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