Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0300
         (527 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075327-1|AAL68194.1|  204|Drosophila melanogaster GH10845p pro...    67   1e-11
AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA...    67   1e-11
BT001644-1|AAN71399.1|  322|Drosophila melanogaster RE41114p pro...    46   2e-05
AY051910-1|AAK93334.1|  322|Drosophila melanogaster LD39912p pro...    46   2e-05
AE014297-2108|AAF55248.2|  322|Drosophila melanogaster CG3303-PA...    46   2e-05

>AY075327-1|AAL68194.1|  204|Drosophila melanogaster GH10845p
           protein.
          Length = 204

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = -3

Query: 420 NLGSSGAVIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSEC 271
           ++G+ G ++K  F  QG++KPVN++F+GTS ELE+ALYT+CF  R D  C
Sbjct: 124 DIGTKGKIVKIRFSHQGLNKPVNTVFVGTSPELELALYTVCFQLRPDRTC 173



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = -2

Query: 517 KNGKFLVLHNWIYFSKEEAANRLNYLGYLKYRQFGEQWSSD*IPLXPTRSGQAG*LYVHW 338
           K+G  +  HNW+Y   EE   R +Y GY+K +  G +     + +  +  G    +   +
Sbjct: 92  KDGTIIGFHNWVYIGDEEKDGRFDYKGYMKEQDIGTKGKI--VKIRFSHQGLNKPVNTVF 149

Query: 337 YIT*VGNGI-VYFVLRDSC*QRV*PETVHND-VSIMTHTFRYRSKNLIGSGYPQI 179
             T     + +Y V       R  P ++ N    I+T+++RYR KNLIGS YP+I
Sbjct: 150 VGTSPELELALYTVCFQLRPDRTCPVSLGNSKFGIVTYSWRYRGKNLIGSAYPEI 204


>AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA
           protein.
          Length = 592

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = -3

Query: 420 NLGSSGAVIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSEC 271
           ++G+ G ++K  F  QG++KPVN++F+GTS ELE+ALYT+CF  R D  C
Sbjct: 512 DIGTKGKIVKIRFSHQGLNKPVNTVFVGTSPELELALYTVCFQLRPDRTC 561



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
 Frame = -2

Query: 517 KNGKFLVLHNWIYFSKEEAANRLNYLGYLKYRQFGEQWSSD*IPLXPTRSGQAG*LYVHW 338
           K+G  +  HNW+Y   EE   R +Y GY+K +  G +     + +  +  G    +   +
Sbjct: 480 KDGTIIGFHNWVYIGDEEKDGRFDYKGYMKEQDIGTKGKI--VKIRFSHQGLNKPVNTVF 537

Query: 337 YIT*VGNGI-VYFVLRDSC*QRV*PETVHND-VSIMTHTFRYRSKNLIGSGYPQI 179
             T     + +Y V       R  P ++ N    I+T+++RYR KNLIGS YP+I
Sbjct: 538 VGTSPELELALYTVCFQLRPDRTCPVSLGNSKFGIVTYSWRYRGKNLIGSAYPEI 592


>BT001644-1|AAN71399.1|  322|Drosophila melanogaster RE41114p
           protein.
          Length = 322

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 399 VIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSE 274
           V+   +    ++KPVN  F+G S EL+MALYT CF+  A  E
Sbjct: 247 VLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEE 288



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 517 KNGKFLVLHNWIYFSKEEAANRLNYLGYLKYRQFGE 410
           ++ K L LHNW+YF+ +E    ++Y G+L +++ G+
Sbjct: 207 RDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGK 242


>AY051910-1|AAK93334.1|  322|Drosophila melanogaster LD39912p
           protein.
          Length = 322

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 399 VIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSE 274
           V+   +    ++KPVN  F+G S EL+MALYT CF+  A  E
Sbjct: 247 VLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEE 288



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 517 KNGKFLVLHNWIYFSKEEAANRLNYLGYLKYRQFGE 410
           ++ K L LHNW+YF+ +E    ++Y G+L +++ G+
Sbjct: 207 RDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGK 242


>AE014297-2108|AAF55248.2|  322|Drosophila melanogaster CG3303-PA
           protein.
          Length = 322

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 399 VIKFHFXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSE 274
           V+   +    ++KPVN  F+G S EL+MALYT CF+  A  E
Sbjct: 247 VLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEE 288



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = -2

Query: 517 KNGKFLVLHNWIYFSKEEAANRLNYLGYLKYRQFGE 410
           ++ K L LHNW+YF+ +E    ++Y G+L +++ G+
Sbjct: 207 RDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGK 242


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,894,042
Number of Sequences: 53049
Number of extensions: 355384
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)