Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0300
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    40   8e-04
Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical p...    27   8.3  
Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 384 FXQQGVDKPVNSMFIGTSXELEMALYTLCFVTRADSE 274
           F   G+ K   S+ IGTS E +MALYT+CF++R   E
Sbjct: 224 FTWDGLLKRAGSILIGTSPEFDMALYTMCFLSRRGRE 260


>Z69884-10|CAA93753.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = +1

Query: 247 HRCGQFQVTLAVSTSHEAQSIQCHFQLX*CTNEHRVNRLVHSLLGEVEFNHC 402
           H CG+ +      T       Q +FQ+   + E    ++     G++  +HC
Sbjct: 122 HECGKMKAVSEFRTVFHLARSQLYFQMPPTSIESDFEKIFQQYFGKLSMHHC 173


>Z69883-7|CAA93745.1|  400|Caenorhabditis elegans Hypothetical
           protein C27C12.3 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = +1

Query: 247 HRCGQFQVTLAVSTSHEAQSIQCHFQLX*CTNEHRVNRLVHSLLGEVEFNHC 402
           H CG+ +      T       Q +FQ+   + E    ++     G++  +HC
Sbjct: 122 HECGKMKAVSEFRTVFHLARSQLYFQMPPTSIESDFEKIFQQYFGKLSMHHC 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,551
Number of Sequences: 27780
Number of extensions: 189467
Number of successful extensions: 304
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)