Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0298
(535 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;... 122 4e-27
UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11; ... 119 4e-26
UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3; M... 97 3e-19
UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10... 69 9e-11
UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;... 68 1e-10
UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27... 67 3e-10
UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14; ... 64 2e-09
UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4; E... 46 4e-04
UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6; P... 45 0.001
UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1; E... 44 0.002
UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2; D... 44 0.003
UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1; G... 42 0.012
UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2; T... 41 0.015
UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiell... 38 0.11
UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lambl... 38 0.11
UniRef50_Q7S133 Cluster: Helicase swr-1; n=3; Sordariomycetes|Re... 36 0.58
UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17; ... 36 0.58
UniRef50_Q9VXY2 Cluster: MAP kinase-activating death domain prot... 36 0.77
UniRef50_Q0JQX8 Cluster: Os01g0133100 protein; n=3; Oryza sativa... 35 1.0
UniRef50_A1XIP9 Cluster: Polyprotein; n=3; ssRNA positive-strand... 35 1.3
UniRef50_A6RFL5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=... 34 1.8
UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=... 34 1.8
UniRef50_UPI0000F1E624 Cluster: PREDICTED: hypothetical protein;... 34 2.3
UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protei... 34 2.3
UniRef50_Q1YL42 Cluster: Putative uncharacterized protein; n=1; ... 33 5.4
UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1; uncul... 33 5.4
UniRef50_Q8BGQ9 Cluster: Adult male hypothalamus cDNA, RIKEN ful... 32 9.5
UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1; G... 32 9.5
UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA helicas... 32 9.5
UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339... 32 9.5
>UniRef50_P05388 Cluster: 60S acidic ribosomal protein P0; n=171;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Homo
sapiens (Human)
Length = 317
Score = 122 bits (295), Expect = 4e-27
Identities = 60/100 (60%), Positives = 70/100 (70%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M RED+ATWKSNYF+KIIQLLD+YPKCFIVGADNVGS+QMQQIR+SLRG ++VLMGK
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM 60
Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRD 382
K + R GFVFT+ DL E+RD
Sbjct: 61 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRD 100
>UniRef50_Q9PV90 Cluster: 60S acidic ribosomal protein P0; n=11;
Eukaryota|Rep: 60S acidic ribosomal protein P0 - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 319
Score = 119 bits (287), Expect = 4e-26
Identities = 59/100 (59%), Positives = 69/100 (69%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M RED+ATWKSNYF+KIIQLLD++PKCFIVGADNVGS+QMQ IR+SLRG ++VLMGK
Sbjct: 1 MPREDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTM 60
Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRD 382
K + R GFVFT+ DL EVRD
Sbjct: 61 MRKAIRGHLENNPALERLLPHIRGNVGFVFTKEDLTEVRD 100
>UniRef50_Q4KTH7 Cluster: 60S acidic ribosomal protein P0; n=3;
Metazoa|Rep: 60S acidic ribosomal protein P0 - Suberites
domuncula (Sponge)
Length = 313
Score = 96.7 bits (230), Expect = 3e-19
Identities = 47/106 (44%), Positives = 63/106 (59%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
MGREDKA WKSNY ++++ L DEY + +V DNVGS+QMQQIRISLRG + +LMGK
Sbjct: 1 MGREDKAAWKSNYVMRLLSLFDEYKRVLLVNVDNVGSKQMQQIRISLRGKATILMGKNTT 60
Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDKTVGEQ 400
K + + GFVFT D+V++R+ + Q
Sbjct: 61 IRKALRGHLEQNPNLEKVLPHVKGNIGFVFTHEDMVDIREIMLSNQ 106
>UniRef50_P57691 Cluster: 60S acidic ribosomal protein P0-3; n=10;
Eukaryota|Rep: 60S acidic ribosomal protein P0-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 323
Score = 68.5 bits (160), Expect = 9e-11
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGK
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 263 CAKP----SKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
+ S+ + T N + G +FT+GDL EV ++
Sbjct: 61 MKRSVRIHSENSGNT--AILNLLPLLQGNVGLIFTKGDLKEVSEE 103
>UniRef50_UPI0000499842 Cluster: 60S acidic ribosomal protein P0;
n=3; Entamoeba histolytica HM-1:IMSS|Rep: 60S acidic
ribosomal protein P0 - Entamoeba histolytica HM-1:IMSS
Length = 316
Score = 68.1 bits (159), Expect = 1e-10
Identities = 37/101 (36%), Positives = 52/101 (51%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
+ +E K K Y VK+ +LL+EY + +V DNVGS Q Q IR LRG+ +MGK
Sbjct: 8 LSKEQKKAKKEAYLVKMKKLLEEYKQVVVVKCDNVGSSQFQTIRKELRGTCEFVMGKNTL 67
Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
K K T + GF+FT+GDL +++ K
Sbjct: 68 IRKAIKNQAETQPELEELLPHIKGNVGFIFTKGDLYQLKAK 108
>UniRef50_O04204 Cluster: 60S acidic ribosomal protein P0-1; n=27;
Eukaryota|Rep: 60S acidic ribosomal protein P0-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 317
Score = 66.9 bits (156), Expect = 3e-10
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +2
Query: 98 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPS 277
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGK +
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 278 K--TTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
+ T Q + + G +FT+GDL EV ++
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEE 104
>UniRef50_Q94660 Cluster: 60S acidic ribosomal protein P0; n=14;
Apicomplexa|Rep: 60S acidic ribosomal protein P0 -
Plasmodium falciparum (isolate 7G8)
Length = 316
Score = 64.1 bits (149), Expect = 2e-09
Identities = 35/100 (35%), Positives = 47/100 (47%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M + K K Y K+ L+ +Y K IV DNVGS QM +R SLRG + +LMGK
Sbjct: 1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTR 60
Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRD 382
K + + GFVF + DL E+R+
Sbjct: 61 IRTALKKNLQAVPQIEKLLPLVKLNMGFVFCKDDLSEIRN 100
>UniRef50_Q52H32 Cluster: 60S acidic ribosomal protein P0; n=4;
Euplotes|Rep: 60S acidic ribosomal protein P0 - Euplotes
minuta
Length = 333
Score = 46.4 bits (105), Expect = 4e-04
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR-GSSIVLMGKT- 256
M +DK K+ +F ++ + D+Y + +V DN+ ++Q+ R LR +S++LMG+
Sbjct: 1 MAGKDKKAKKNEFFERVYNVFDKYTRALLVKCDNISARQIHACRKELRSNNSLMLMGENT 60
Query: 257 -------Q*CAKPSKT---------TWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRD 382
+ +KP ++ TWT I + G +FT DL +++D
Sbjct: 61 LIKAALQKRISKPIESESDFEERSKTWTPIPHMEPLVRLLKGNLGIIFTNHDLTDIKD 118
>UniRef50_A0DDF2 Cluster: 60S acidic ribosomal protein P0; n=6;
Paramecium tetraurelia|Rep: 60S acidic ribosomal protein
P0 - Paramecium tetraurelia
Length = 323
Score = 45.2 bits (102), Expect = 0.001
Identities = 23/58 (39%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQI-RISLRGSSIVLMGK 253
MG+++ K F KI +LL +Y + IVG NVGS+Q+Q I RI + ++++++GK
Sbjct: 1 MGKKETKDKKPTQFKKIYELLSKYTQVIIVGLANVGSKQVQDIRRILAKRNALLVIGK 58
>UniRef50_Q9U7P1 Cluster: 60S acidic ribosomal protein P0; n=1;
Eufolliculina uhligi|Rep: 60S acidic ribosomal protein
P0 - Eufolliculina uhligi
Length = 324
Score = 44.4 bits (100), Expect = 0.002
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = +2
Query: 110 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 253
K +Y+ K+ L++E P+ I A+NVGS+Q+Q +R LR + +L GK
Sbjct: 3 KYDYWEKLWTLIEEAPRILICEANNVGSKQLQDLRRVLRNKATILFGK 50
>UniRef50_P22685 Cluster: 60S acidic ribosomal protein P0; n=2;
Dictyostelium discoideum|Rep: 60S acidic ribosomal
protein P0 - Dictyostelium discoideum (Slime mold)
Length = 305
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/48 (45%), Positives = 28/48 (58%)
Frame = +2
Query: 110 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 253
K + K +L Y K + AD VGS Q+Q+IR S+RG VLMGK
Sbjct: 9 KKLFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGK 56
>UniRef50_Q7QU12 Cluster: 60S acidic ribosomal protein P0; n=1;
Giardia lamblia ATCC 50803|Rep: 60S acidic ribosomal
protein P0 - Giardia lamblia ATCC 50803
Length = 326
Score = 41.5 bits (93), Expect = 0.012
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = +2
Query: 98 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPS 277
K + Y K+ + L EY K +V DNV S Q+ QIR LRG + +L GK +
Sbjct: 9 KQARRQAYVAKLERCLTEYKKIVLVSVDNVRSFQIAQIRRLLRGKAELLAGKNTIIKR-- 66
Query: 278 KTTWTTIQPSRNCCHTSRATXGFVFTRGD 364
+N + FVFT GD
Sbjct: 67 VINQLDDDKLKNLLPYIKLNVAFVFTNGD 95
>UniRef50_Q22HK6 Cluster: 60S acidic ribosomal protein P0; n=2;
Tetrahymena thermophila|Rep: 60S acidic ribosomal
protein P0 - Tetrahymena thermophila SB210
Length = 324
Score = 41.1 bits (92), Expect = 0.015
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +2
Query: 95 DKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 253
DK K + + +LL +Y + +NVGS Q+QQIR SL ++I+++GK
Sbjct: 7 DKKAKKDAFIRRFYELLSKYDSIALCTLENVGSLQLQQIRRSLGSNNIMVIGK 59
>UniRef50_Q3LWA7 Cluster: Ribosomal protein L10; n=1; Bigelowiella
natans|Rep: Ribosomal protein L10 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 251
Score = 38.3 bits (85), Expect = 0.11
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 128 KIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 253
K I LL+ Y IV +N+ S+Q+ IR LRG+S +++GK
Sbjct: 11 KFISLLNSYDTMVIVNMNNIRSKQIHDIRKHLRGTSEIVVGK 52
>UniRef50_Q7R447 Cluster: GLP_254_32992_33747; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_254_32992_33747 - Giardia lamblia
ATCC 50803
Length = 251
Score = 38.3 bits (85), Expect = 0.11
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 38 LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRI 217
L+ + RS L+++ ++ + K +I + D Y +++ + N+ S QQ+R
Sbjct: 10 LMPRSKRSKTVVLAKVEKKTREA-KQEIIKQIREAFDTYDTVYVIDSHNMTSSSWQQLRT 68
Query: 218 SLRGSSIVLMGKTQ 259
S++G + + MGK Q
Sbjct: 69 SMKGYARIFMGKNQ 82
>UniRef50_Q7S133 Cluster: Helicase swr-1; n=3; Sordariomycetes|Rep:
Helicase swr-1 - Neurospora crassa
Length = 1845
Score = 35.9 bits (79), Expect = 0.58
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 195 NRCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCS 353
N+ S S SR AP S S KH A+ PP ++ R++ TH+ + AS S
Sbjct: 224 NKSSASTSRKPAPASSSNSKHAPAKMPPPPPPPKAPARKSATTHETRPSASRS 276
>UniRef50_Q7S302 Cluster: mRNA turnover protein 4 homolog; n=17;
Ascomycota|Rep: mRNA turnover protein 4 homolog -
Neurospora crassa
Length = 252
Score = 35.9 bits (79), Expect = 0.58
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 47 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 226
K R+ L+++ ++++ K F I + + Y CF+ DN+ + ++ +R L
Sbjct: 3 KSKRAKVYNLTQVTKKNREQ-KEKLFENIRECIPNYQHCFVFSIDNMRNNYLKDVRKELN 61
Query: 227 GSSIVLMGKTQ*CAKPSKTTWTTIQPS--RNCCHTSRATXGFVFTRGDLVEVRD 382
I GKT+ A+ TT Q + G +FT D E++D
Sbjct: 62 DCRI-FFGKTKLTARALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKD 114
>UniRef50_Q9VXY2 Cluster: MAP kinase-activating death domain protein;
n=5; cellular organisms|Rep: MAP kinase-activating death
domain protein - Drosophila melanogaster (Fruit fly)
Length = 2075
Score = 35.5 bits (78), Expect = 0.77
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 249 EKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCSPAETSLRSVTKLLENKVQAXARPGX 428
+KH Q HQ+P QQ P +T T Q Q A S T+ ++ N++ A ++ G
Sbjct: 1792 QKHQQQQQHQQPQ-QQQQPHQT-TTQQNQPTAVASAVPTTTAPAGQVNPNRMTAKSQAGS 1849
Query: 429 IA 434
I+
Sbjct: 1850 IS 1851
>UniRef50_Q0JQX8 Cluster: Os01g0133100 protein; n=3; Oryza
sativa|Rep: Os01g0133100 protein - Oryza sativa subsp.
japonica (Rice)
Length = 654
Score = 35.1 bits (77), Expect = 1.0
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 282 PPGQQSSPRETVA-THQGQRLASCSPAETSL--RSVTKLLENKVQAXARPGXIAPLSVXX 452
PP Q+ P A H G L + SP + L + TKLLE +A +R L+
Sbjct: 141 PPSQRPPPLSPAARNHHGADLPARSPRRSRLVHAAATKLLEPSARASSRASARLALAYAC 200
Query: 453 SRPQH 467
S PQH
Sbjct: 201 SSPQH 205
>UniRef50_A1XIP9 Cluster: Polyprotein; n=3; ssRNA positive-strand
viruses, no DNA stage|Rep: Polyprotein - Tomato torrado
virus
Length = 2158
Score = 34.7 bits (76), Expect = 1.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 142 LGRVPKMFHRGCR*RGLATDAADPYLATWLQYRAHGKNTMMRKAIKDHLD--NNPALEKL 315
+ + K++ C+ G+ A+P++ W GK+T MR I D LD P L +L
Sbjct: 363 IXHLDKIYGENCQHTGVGQYRAEPFMVQWYGASGCGKSTSMRLFINDVLDRMEEPKLNRL 422
>UniRef50_A6RFL5 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 632
Score = 34.7 bits (76), Expect = 1.3
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +3
Query: 156 QNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKHN-DAQSHQRPPGQQSSPRETVATHQG 332
Q + + VP + + N SRS AP S E+H A+SH PP SP H
Sbjct: 208 QPIVNGVPPSSSENITSRSTDNIAAPNSTGSERHPWSAESHIEPP----SPVSHFEPH-A 262
Query: 333 QRLASCSPAETSLRSVTKLLE 395
RL++ + ++SLR+ + L+
Sbjct: 263 SRLSTLAHQDSSLRTAAESLD 283
>UniRef50_Q8TX50 Cluster: Acidic ribosomal protein P0 homolog; n=4;
Euryarchaeota|Rep: Acidic ribosomal protein P0 homolog -
Methanopyrus kandleri
Length = 357
Score = 34.3 bits (75), Expect = 1.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 86 GREDK-ATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVL 244
G E K A WK ++ +L+DEY +V + + + Q+Q+IR LR ++
Sbjct: 12 GYEPKVAEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTII 65
Score = 33.9 bits (74), Expect = 2.3
Identities = 14/28 (50%), Positives = 21/28 (75%)
Frame = +1
Query: 250 KNTMMRKAIKDHLDNNPALEKLLPHIKG 333
+NT+MR A+++ LD P LE LL +I+G
Sbjct: 69 RNTLMRIALEEKLDERPELEPLLDYIEG 96
>UniRef50_P13553 Cluster: Acidic ribosomal protein P0 homolog; n=6;
Halobacteriaceae|Rep: Acidic ribosomal protein P0
homolog - Halobacterium salinarium (Halobacterium
halobium)
Length = 352
Score = 34.3 bits (75), Expect = 1.8
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 92 EDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGK 253
E+ WK +++ LL+ Y +V + S+Q+Q +R L G + + M +
Sbjct: 10 EEVPEWKRQEVAELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSR 63
>UniRef50_UPI0000F1E624 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 1139
Score = 33.9 bits (74), Expect = 2.3
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 264 AQSHQRPPGQQSSPRETVATHQGQRLASCSPAETSLRSVTKLLENKVQAXARP--GXIAP 437
+Q+H PPGQQ S R +++HQ + P S + T L + A P G +P
Sbjct: 114 SQTHSPPPGQQKSTR--ISSHQPHSTVTSPPMGISATTTTSSLSSSSSLGAPPHQGSPSP 171
Query: 438 LSVXXSRP 461
+ S P
Sbjct: 172 IHQTPSSP 179
>UniRef50_Q16RH9 Cluster: Temporarily assignedprotein name protein;
n=2; Culicidae|Rep: Temporarily assignedprotein name
protein - Aedes aegypti (Yellowfever mosquito)
Length = 1309
Score = 33.9 bits (74), Expect = 2.3
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 341 GFVFTRGDLVEVRDK 385
GFVFT+GDLVEVRDK
Sbjct: 717 GFVFTKGDLVEVRDK 731
>UniRef50_Q1YL42 Cluster: Putative uncharacterized protein; n=1;
Aurantimonas sp. SI85-9A1|Rep: Putative uncharacterized
protein - Aurantimonas sp. SI85-9A1
Length = 136
Score = 32.7 bits (71), Expect = 5.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 189 ARNRCSRSVSRYVAPVSCSWEKHNDAQSHQR 281
ARNRC + +R P + +W++ D S QR
Sbjct: 91 ARNRCRNTAARSAKPAAATWQRAADLNSRQR 121
>UniRef50_Q2Y4X9 Cluster: Acidic ribosomal protein P0; n=1;
uncultured archaeon|Rep: Acidic ribosomal protein P0 -
uncultured archaeon
Length = 313
Score = 32.7 bits (71), Expect = 5.4
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 107 WKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAK 271
WK I LL Y + +GS+Q+Q+IR RG +++ + K A+
Sbjct: 11 WKEEQVASINSLLGSYDTIGLAKIRGLGSKQLQRIRKEFRGDALLKVSKNSMIAR 65
>UniRef50_Q8BGQ9 Cluster: Adult male hypothalamus cDNA, RIKEN
full-length enriched library, clone:A230001H04
product:hypothetical protein, full insert sequence; n=1;
Mus musculus|Rep: Adult male hypothalamus cDNA, RIKEN
full-length enriched library, clone:A230001H04
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 107
Score = 31.9 bits (69), Expect = 9.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 287 WTTIQPSRNCCHTSRATXGFVFTR 358
WT I PS CCHTS A +TR
Sbjct: 31 WTRILPSHCCCHTSLANTRMYWTR 54
>UniRef50_Q98S65 Cluster: 60S acidic ribosomal protein P0; n=1;
Guillardia theta|Rep: 60S acidic ribosomal protein P0 -
Guillardia theta (Cryptomonas phi)
Length = 297
Score = 31.9 bits (69), Expect = 9.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 247 GKNTMMRKAIKDHLDNNPALEKLLPHIKGN 336
GKNT+++K ++D L N+ ++L I GN
Sbjct: 55 GKNTLIKKVLRDRLKNSTLSNEILTKINGN 84
>UniRef50_Q011U7 Cluster: Myc-regulated DEAD/H box 18 RNA
helicase-like; n=9; Eukaryota|Rep: Myc-regulated DEAD/H
box 18 RNA helicase-like - Ostreococcus tauri
Length = 2729
Score = 31.9 bits (69), Expect = 9.5
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 3/110 (2%)
Frame = +3
Query: 192 RNRCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCSPAETSL 371
R+R + ++ A ++ NDA H P +SP V THQ SP T+
Sbjct: 2043 RSRARKPATKDAAVADPVEQEQNDANVHTETPKTPTSPARCV-THQRTESRHTSPRPTAA 2101
Query: 372 R---SVTKLLENKVQAXARPGXIAPLSVXXSRPQHXVLRSXXXTXFFXGS 512
R ++T +E A P A ++V P H + + F G+
Sbjct: 2102 RHSHALTASIERPPDPHASPRGPARVAV---APSHQIPKPQRDGDSFGGT 2148
>UniRef50_O94085 Cluster: Putative uncharacterized protein YLR339C;
n=5; Saccharomycetales|Rep: Putative uncharacterized
protein YLR339C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 183
Score = 31.9 bits (69), Expect = 9.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -3
Query: 335 LPLMCGNSFSRAGLLSRWSLMALRIIVFFP 246
LPL GN+FS++G + LMAL +VF P
Sbjct: 68 LPLTKGNNFSKSGKSDKKPLMALLTMVFLP 97
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,715,298
Number of Sequences: 1657284
Number of extensions: 10166618
Number of successful extensions: 27588
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27568
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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