Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0298
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    65   7e-12
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    31   0.14 
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa...    25   7.1  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 33/94 (35%), Positives = 48/94 (51%)
 Frame = +2

Query: 110 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPSKTTW 289
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGK     +  +   
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 290 TTIQPSRNCCHTSRATXGFVFTRGDLVEVRDKTV 391
             +          R   GFVFT  DL EVR+  +
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETII 101


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +2

Query: 11  EPYGSRAFCLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVG 190
           E YG     ++L+ H+ P+    R+G + KA  K    + + + L  + +  +   D  G
Sbjct: 244 EAYGITPGDVILQLHQKPHPVFERLGDDLKAKLK----ISLAEALTGFNRVILTTLDGRG 299

Query: 191 SQQMQQI-RISLRGSSIVLMGKTQ*CAKPSKT 283
            + +Q I +I   G  +++ G+     K SKT
Sbjct: 300 LEYVQPIGKILHPGDCLIIPGEGM--YKDSKT 329


>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 295 NPALEKLLPHIKGNXWLRVH 354
           +PALE+LL  +K   W+  H
Sbjct: 216 SPALEELLVELKPRYWMAAH 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,350
Number of Sequences: 5004
Number of extensions: 40588
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)