Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0298
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 70 1e-12
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 70 1e-12
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 70 1e-12
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 35 0.036
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 31 0.58
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 31 0.58
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 30 1.0
01_01_0463 - 3424951-3425065,3425191-3425258,3425362-3425586,342... 30 1.0
09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709... 28 5.4
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 7.2
06_01_0036 + 364316-365758 27 7.2
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 7.2
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489... 27 7.2
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 27 9.5
06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544 27 9.5
01_01_0256 - 2083973-2084816,2084922-2086093 27 9.5
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 70.1 bits (164), Expect = 1e-12
Identities = 45/102 (44%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +2
Query: 89 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKT---Q 259
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK +
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 260 *CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
C K T + G +FT+GDL EVR++
Sbjct: 64 RCIKVHADN-TGNKDFLELMPLLVGNVGLIFTKGDLKEVREE 104
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 70.1 bits (164), Expect = 1e-12
Identities = 45/102 (44%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +2
Query: 89 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKT---Q 259
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK +
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 260 *CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
C K T + G +FT+GDL EVR++
Sbjct: 64 RCIKVHADN-TGNKDFLELMPLLVGNVGLIFTKGDLKEVREE 104
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 70.1 bits (164), Expect = 1e-12
Identities = 45/102 (44%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = +2
Query: 89 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKT---Q 259
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGK +
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 260 *CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
C K T + G +FT+GDL EVR++
Sbjct: 64 RCIKVHADN-TGNKEFLELMPLLVGNVGLIFTKGDLKEVREE 104
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 35.1 bits (77), Expect = 0.036
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +3
Query: 282 PPGQQSSPRETVA-THQGQRLASCSPAETSL--RSVTKLLENKVQAXARPGXIAPLSVXX 452
PP Q+ P A H G L + SP + L + TKLLE +A +R L+
Sbjct: 141 PPSQRPPPLSPAARNHHGADLPARSPRRSRLVHAAATKLLEPSARASSRASARLALAYAC 200
Query: 453 SRPQH 467
S PQH
Sbjct: 201 SSPQH 205
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 152 YPKCFI--VGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPSKTTWTTIQPSRNCC 319
Y KC I VG DN+ Q MQQ R SL I+ P+K T + +Q C
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEILKPENLIWAVSPAKLTISEVQDVSPYC 1349
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 47 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 226
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 227 GSS-IVLMGK 253
SS I L GK
Sbjct: 63 SSSRIFLAGK 72
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 59 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 235
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 236 IVLMGK 253
I L GK
Sbjct: 203 IFLAGK 208
>01_01_0463 -
3424951-3425065,3425191-3425258,3425362-3425586,
3425669-3425804,3425905-3426107,3426227-3426340,
3426432-3426506,3426625-3426783,3426868-3427038,
3427227-3427274,3427366-3427491,3427611-3427718,
3427800-3427913,3428320-3428496
Length = 612
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 183 TWARNRCSRSVSRYVAPVSCS---WEKHNDAQSHQRP-PGQQSSPRETVATHQGQRLASC 350
TW N+ S S S + P C WE+H H P PGQ S RE+ +R+ASC
Sbjct: 101 TWRTNKFSDS-SPFSMPHPCDSHLWERH---LFHCVPVPGQNSWTRESSPGPDLRRIASC 156
Query: 351 SPAE 362
+E
Sbjct: 157 FTSE 160
>09_02_0578 +
10869627-10869702,10870489-10870555,10870813-10870963,
10871043-10871111,10871992-10872030,10872113-10872186,
10872281-10872347,10872902-10873075,10873169-10873852
Length = 466
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 91 PTHPG*CGVGTSMKFKDKTKRTTSVRLVP 5
P P C + +S+K + +KRT+S+++VP
Sbjct: 297 PIKPALCSMVSSLKDTNLSKRTSSLKMVP 325
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 321 WQQFLEGWIVVQVVFDGFAHHCV 253
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>06_01_0036 + 364316-365758
Length = 480
Score = 27.5 bits (58), Expect = 7.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = +3
Query: 204 SRSVSRYVAPVSCSWEKHN---DAQSHQRPP-GQQSSPRETVATHQGQRLASCSPAETSL 371
+ S++R+ A + +E D S PP G ++P E VA H + SPA L
Sbjct: 288 NESLTRFAAELGIPFEFTALVFDPLSSASPPLGLSAAPDEAVAVHLTAGSGAFSPAPAHL 347
Query: 372 RSVTKL 389
R V +L
Sbjct: 348 RVVKEL 353
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 110 KSNYFVKIIQLLDEYPKCF 166
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_05_1094 -
30348366-30348467,30348571-30348753,30348833-30348934,
30349617-30349967,30350049-30350276,30350353-30350509,
30351189-30351370,30351443-30351866,30351949-30352892,
30353509-30353773,30354558-30355120
Length = 1166
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 274 IKDHLDNNPALEKLLPHIKGNXWLRV 351
++ HLD P ++P KGN W+R+
Sbjct: 747 VRGHLDYTPHAWNVVPVRKGNTWVRM 772
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 35 CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPK 160
CL L+F T R R K T K + II++L+ YP+
Sbjct: 812 CLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>06_02_0108 - 11917186-11917207,11917834-11917943,11918116-11918544
Length = 186
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 180 ITWARNRCSRSVSRYVAPVSCSWEKHNDAQSHQ--RPPGQQSSPRETVA 320
+ W R SR S P++ SW+ + A S Q PP Q S T A
Sbjct: 34 LNWNGFRLSRKHSMKQPPIAASWQALHSADSCQTNTPPPQISLNTHTAA 82
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 207 RSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCS 353
R +S A V+C +D+ +H R SSP E +Q Q+LA+ +
Sbjct: 204 RGISTDSASVNCLLGLEDDSSTHSRGGPPNSSPAEEQRANQ-QKLAAAA 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,760,975
Number of Sequences: 37544
Number of extensions: 295896
Number of successful extensions: 776
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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