Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0298
         (535 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            28   0.17 
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    26   0.91 
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    24   3.7  

>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 393 PTVLSRTSTRSPRVNTKPXVALDVWQQFLEGWIVVQVV 280
           P++ S  S  +PR +      LD W   L  WI+  V+
Sbjct: 505 PSIRSAASEWNPRAHQPMIALLDAWAPLLPAWILDNVL 542


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 175 CR*RGLATDAADPYLATWLQYRAHGK-NTMMRKAIKDH 285
           C  +G  T A  P +A W   R HG+ N  M + + DH
Sbjct: 854 CSTKGRTTHALIPNIAAWTS-RKHGEVNFYMTQFLSDH 890


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 388 SFVTDLNEVSAGEH--EAXRCP*CVATVSRGLDC 293
           S+VT   EV+   +  +A  C  C A V  GL+C
Sbjct: 9   SYVTLCGEVTGVSYRGQAQTCRNCAAPVHHGLNC 42


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,294
Number of Sequences: 2352
Number of extensions: 9210
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49474503
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)