Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0298
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    96   1e-20
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical ...    29   1.6  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   6.4  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 46/101 (45%), Positives = 63/101 (62%)
 Frame = +2

Query: 83  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGK   
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 263 CAKPSKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
             K  +                    GFVFT+ DL E+R K
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSK 101


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
           protein F52H3.7a protein.
          Length = 1245

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 249 EKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCSPAETSLRSVTKLLENKVQA---XAR 419
           E H D  +    P  + S     A+H+  +  S +P E ++ SV    E    A    A 
Sbjct: 767 EDHKDEAASTAEPAHEESVTVVEASHKEPQAESAAPVEENIESVHVASEESAPAPSGDAA 826

Query: 420 PGXIAPLS 443
           P   AP+S
Sbjct: 827 PSESAPVS 834


>AL021346-1|CAA16154.1|  823|Caenorhabditis elegans Hypothetical
           protein H37A05.1 protein.
          Length = 823

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +3

Query: 204 SRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRETVATHQGQRLASCSPAETSLRS 377
           S  VSR V+  S     H+D      PP  ++  RE+V    G  + S + A   +RS
Sbjct: 425 SGHVSRGVSQPSSPISNHDDYTPTTTPPNDKTPTRESVRFGAGNDIPSSTSATNGVRS 482


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 38  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 151
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 243 SWEKHNDAQSHQRPPGQQSSPRETVATH 326
           S+  H+ + SH   PGQQ S   + ++H
Sbjct: 9   SYSHHHPSSSHHHHPGQQQSSSSSSSSH 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,371
Number of Sequences: 27780
Number of extensions: 228314
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)