Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0298
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   1.1  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   2.0  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    23   2.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.0  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + ++ A PG   P+ +   RP H  LR
Sbjct: 88  LRREAESEAEPGNNRPVYIPQPRPPHPRLR 117



 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 60  LRREAEPKAEPGNNRPIYIPQPRPPHPRLR 89



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 32  LRREAKPEAEPGNNRPIYIPQPRPPHPRLR 61



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 414 ARPGXIAPLSVXXSRPQHXVLR 479
           A PG   P+ +   RP H  LR
Sbjct: 122 AEPGNNRPVYIPQPRPPHPRLR 143


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 59  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 88



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 87  LRREAELEAEPGNNRPVYISQPRPPHPRLR 116



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 115 LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 144



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 143 LRREAELEAEPGNNRPVYISQPRPPHPRLR 172



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 171 LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 200



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 199 LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 228



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 227 LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 256



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 31  LRREAKPEAEPGNNRPVYIPQPRPPHPRLR 60



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQH 467
           L  + +  A+PG   P+ +   RP H
Sbjct: 255 LRREAKPEAKPGNNRPVYIPQPRPPH 280


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 32  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 61



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 60  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 89



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 88  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 117



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQH 467
           L  + +  A PG   P+ +   RP H
Sbjct: 116 LRREAEPEAEPGNNRPVYIPQPRPPH 141


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 31  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 60



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 59  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 88



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 87  LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 116



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 115 LRREAEPEAEPGNNRPVYIPQPRPPHPRLR 144



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 3   LRREAKPEAEPGNNRPVYIPQPRPPHPRLR 32



 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQHXVLR 479
           L  + +  A PG   P+ +   RP H  LR
Sbjct: 143 LRREAKPEAEPGNNRPVYIPQPRPPHPRLR 172



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 390 LENKVQAXARPGXIAPLSVXXSRPQH 467
           L  + +  A PG   P+ +   RP H
Sbjct: 171 LRREAEPEAEPGNNRPVYIPQPRPPH 196


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 323 CGNSFSRAGLLSRWSLMALRIIVFF 249
           CG  +   GLLS   L+   I V+F
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYF 226


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 249 EKHNDAQSHQRPPGQQSSPRETVATHQG 332
           ++ + A S Q  PG     ++    HQG
Sbjct: 207 QQQSQAASQQSQPGMHPRQQQQAQQHQG 234


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 323 CGNSFSRAGLLSRWSLMALRIIVFF 249
           CG  +   GLLS   L+   I V+F
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYF 102


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 107 WKSNYFVKIIQLLDEYP 157
           W+   F  ++++LDE+P
Sbjct: 862 WRHWKFPNLVEVLDEFP 878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,983
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 28
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)