Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0298
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 70 9e-13
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 69 3e-12
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 67 8e-12
At5g13260.1 68418.m01523 expressed protein 28 3.4
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 28 3.4
At5g41100.2 68418.m04997 expressed protein 27 7.9
At5g41100.1 68418.m04996 expressed protein 27 7.9
At2g46250.1 68415.m05751 myosin heavy chain-related contains wea... 27 7.9
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 70.1 bits (164), Expect = 9e-13
Identities = 43/105 (40%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGK
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 263 CAKP----SKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
+ S+ T T N + G +FT+GDL EV ++
Sbjct: 61 MKRSVRIHSENTGNT--AILNLLPLLQGNVGLIFTKGDLKEVSEE 103
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 68.5 bits (160), Expect = 3e-12
Identities = 42/105 (40%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Frame = +2
Query: 83 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ* 262
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGK
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 263 CAKP----SKTTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
+ S+ + T N + G +FT+GDL EV ++
Sbjct: 61 MKRSVRIHSENSGNT--AILNLLPLLQGNVGLIFTKGDLKEVSEE 103
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 66.9 bits (156), Expect = 8e-12
Identities = 40/98 (40%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +2
Query: 98 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKTQ*CAKPS 277
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGK +
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 278 K--TTWTTIQPSRNCCHTSRATXGFVFTRGDLVEVRDK 385
+ T Q + + G +FT+GDL EV ++
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEE 104
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 242 ARYWSHVARYGSAASVASPRYRH 174
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 28.3 bits (60), Expect = 3.4
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +3
Query: 168 SWVPITWARNRCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRETVATHQGQRLAS 347
SW +T +N S+ S+ P+S S +K + S +S E+ A + +
Sbjct: 579 SWKKMTGCKNAESKKASKTHVPISQSQDKKESSDSES--DDSESDDSESEAEQMVDGILT 636
Query: 348 CSPAET 365
C ET
Sbjct: 637 CGSKET 642
>At5g41100.2 68418.m04997 expressed protein
Length = 582
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 174 VPITWARNRCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRET 314
VP+ S +S +P S + N+ RPPGQ + PR +
Sbjct: 428 VPVAVQAQSSSPRISPTASPPLASSPRINELHELPRPPGQFAPPRRS 474
>At5g41100.1 68418.m04996 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 174 VPITWARNRCSRSVSRYVAPVSCSWEKHNDAQSHQRPPGQQSSPRET 314
VP+ S +S +P S + N+ RPPGQ + PR +
Sbjct: 428 VPVAVQAQSSSPRISPTASPPLASSPRINELHELPRPPGQFAPPRRS 474
>At2g46250.1 68415.m05751 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, muscle
(Swiss-Prot:P05661) [Drosophila melanogaster]
Length = 468
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 249 EKHNDAQSHQRPPGQQSSPRETVAT---HQGQRLASCSPAETSLRSVTKLLENKVQAXAR 419
E H+ + H PP + S R+ AT G L SPA S S + + + A ++
Sbjct: 87 ESHSRSPLHDHPPSRASLRRQIAATDDYRNGDLLQPISPASCSSSSSSLQVVVRKPAFSQ 146
Query: 420 PGXIA 434
G A
Sbjct: 147 TGSSA 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,277
Number of Sequences: 28952
Number of extensions: 225228
Number of successful extensions: 634
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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