Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1; ...    35   0.54 
UniRef50_A7A9W8 Cluster: Putative uncharacterized protein; n=1; ...    32   3.8  
UniRef50_A6E8J2 Cluster: Competence protein; transcription facto...    32   3.8  
UniRef50_Q8LJH4 Cluster: Putative uncharacterized protein P0431H...    32   3.8  
UniRef50_UPI000065E699 Cluster: PHD finger protein 20 (Hepatocel...    31   5.1  
UniRef50_A5KMH4 Cluster: Putative uncharacterized protein; n=5; ...    31   8.9  
UniRef50_Q245F4 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  
UniRef50_P32606 Cluster: Putative mitochondrial translation syst...    31   8.9  

>UniRef50_Q0UTJ6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 848

 Score = 34.7 bits (76), Expect = 0.54
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 241 KVSISSNTSARTSQKAVCVQHTQHPRP-GFPPPLPIKKYKTL 119
           K    ++TS  TS  AV   HT+  RP GFPP L I K K L
Sbjct: 589 KAGTRNSTSIPTSASAVPNTHTESSRPSGFPPKLNIPKRKNL 630


>UniRef50_A7A9W8 Cluster: Putative uncharacterized protein; n=1;
           Parabacteroides merdae ATCC 43184|Rep: Putative
           uncharacterized protein - Parabacteroides merdae ATCC
           43184
          Length = 1112

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 366 VVTSYWPAAKSMPKIXYYNTFTYRRPTRVLYHPKGRLGCTR 244
           ++TS      S P I Y  +F+Y++PT    +P+GR G  R
Sbjct: 317 LITSKTGKVMSKPTIEYSGSFSYQQPTNKDMYPEGRDGFLR 357


>UniRef50_A6E8J2 Cluster: Competence protein; transcription factor;
           n=1; Pedobacter sp. BAL39|Rep: Competence protein;
           transcription factor - Pedobacter sp. BAL39
          Length = 214

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 366 VVTSYWPAAKSMPKIXYYNTFTYRRPTRVLYHPK 265
           V+  Y P  K++P   YY +F +++P RV Y  K
Sbjct: 137 VMNFYHPELKNIPLTSYYYSFCWKQPHRVWYEAK 170


>UniRef50_Q8LJH4 Cluster: Putative uncharacterized protein
           P0431H09.37; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0431H09.37 - Oryza sativa subsp. japonica (Rice)
          Length = 199

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 265 RSIRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLP 140
           RS+R HP + S+ S  S+ T+  AV  +  + PRP   PP P
Sbjct: 123 RSLRRHPPRPSLPS-VSSLTATSAVVREPRRRPRPHRRPPRP 163


>UniRef50_UPI000065E699 Cluster: PHD finger protein 20
           (Hepatocellular carcinoma-associated antigen 58)
           (Glioma-expressed antigen 2) (Transcription factor TZP)
           (Novel zinc finger protein).; n=1; Takifugu
           rubripes|Rep: PHD finger protein 20 (Hepatocellular
           carcinoma-associated antigen 58) (Glioma-expressed
           antigen 2) (Transcription factor TZP) (Novel zinc finger
           protein). - Takifugu rubripes
          Length = 867

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTS---QKAVCVQHTQHPRPGFPPPLPIKKYKTL 119
           +H  +VS+S  T+A +    QK      +  P    PPP P+K Y+ +
Sbjct: 286 MHKEQVSVSMTTTASSGEVEQKPNIQSESSRPAEDVPPPQPVKLYRVI 333


>UniRef50_A5KMH4 Cluster: Putative uncharacterized protein; n=5;
           Clostridiales|Rep: Putative uncharacterized protein -
           Ruminococcus torques ATCC 27756
          Length = 323

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 12  RLSRLVDSESASELFEKLLLDEISVK*NITYKTAF 116
           R + L+D+++ S  + K +LDE+S   N+TYK  +
Sbjct: 4   RFALLIDADNVSAKYIKPILDELSKYGNVTYKRIY 38


>UniRef50_Q245F4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 779

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 226 SNTSARTSQKAVCVQHTQHPRPGFPPPLPIK-KYKTL*KAVLYVIFY 89
           +N    T++K +C + ++ P+  +   LP K K+K L K  LY++F+
Sbjct: 268 ANQEKITNEKQICKKISKKPKYIYGTHLPRKNKFKLLVKCFLYILFF 314


>UniRef50_P32606 Cluster: Putative mitochondrial translation system
           component PET127; n=2; Saccharomyces cerevisiae|Rep:
           Putative mitochondrial translation system component
           PET127 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 800

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 216 VREHHRKRFVSSTRNIRGPASHLHYQ*KNIKR 121
           V + HRK+++SS+ ++    S LHY   N +R
Sbjct: 254 VAKEHRKKYISSSSSMTSVLSQLHYLLSNFRR 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 347,875,185
Number of Sequences: 1657284
Number of extensions: 6323386
Number of successful extensions: 15103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15092
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)