Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   1.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   2.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   6.5  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    24   8.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 172 HPRPGFPPPLPIK 134
           HP P  PPPLP+K
Sbjct: 904 HPTPPPPPPLPVK 916


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 276 YHPKGRLGCTRPR 238
           YH  G +GCT+PR
Sbjct: 534 YHRNGMIGCTQPR 546


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 15  LSRLVDSESASELFEKLLLDEISVK*NITYKTAFHSVLYFFI 140
           L   +D +  +  F K L+     K N++YK   H+++ F +
Sbjct: 209 LLEFLDEQGITVKFMKALISRSWRKENVSYKHWIHNIIGFIL 250


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 247  PTKVSISSNTSARTSQKAVCVQHTQHPRPGFPP 149
            P K  +  +   R++Q  V  Q T H +  FPP
Sbjct: 920  PVKPPVPPSRRDRSAQDGVVQQATPHIQDEFPP 952


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,571
Number of Sequences: 5004
Number of extensions: 26203
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)