Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445...    28   2.6  
11_03_0015 + 8975199-8975277,8975574-8975607,8976744-8976957,897...    27   3.5  
11_06_0398 + 23122828-23123043,23124769-23125173                       27   6.1  
07_03_0958 + 22881718-22881999,22882114-22883880                       27   6.1  
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067     27   6.1  
05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871...    26   8.1  

>06_03_1006 +
           26844161-26844198,26844304-26844372,26844526-26844591,
           26844831-26844902,26844982-26845053,26846179-26846244,
           26846409-26846881,26846966-26847324,26847429-26847697,
           26847780-26847918,26848323-26848462,26848612-26848768,
           26848925-26848978,26849457-26849539,26851085-26851136
          Length = 702

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 223 NTSARTSQKAVCVQHTQHPRPGFPPPLPIKK 131
           N  ART+ +   V     P P F PP P++K
Sbjct: 312 NNLARTNSELFAVDPPPPPPPPFLPPFPVEK 342


>11_03_0015 +
           8975199-8975277,8975574-8975607,8976744-8976957,
           8977144-8977182,8977266-8977358,8977448-8977546,
           8978163-8978264,8978301-8978378,8978696-8978779,
           8979172-8979237,8979861-8979947
          Length = 324

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -3

Query: 176 ATSAARLPTSTTNKKI*NAMKGSFIC 99
           ATS+++ P+S TNK++ +  KG  +C
Sbjct: 210 ATSSSQKPSSETNKRVGSLEKGMELC 235


>11_06_0398 + 23122828-23123043,23124769-23125173
          Length = 206

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTSQKAVCVQHTQH---PRPG 158
           L  TK +I    S RTS  ++C+ ++Q+   PRPG
Sbjct: 148 LENTKFAIWGAGSNRTSSASLCIANSQYPFNPRPG 182


>07_03_0958 + 22881718-22881999,22882114-22883880
          Length = 682

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 202 QKAVCVQHTQHPRPGFPPPLPIKKYKTL*KAVLY 101
           ++A+     + P P  PP +P+  Y +L    LY
Sbjct: 595 KQALAALQFEAPLPALPPTMPVPTYSSLPSLALY 628


>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
          Length = 1064

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 214 ARTSQKAVCVQHTQHPRPGFPPPLP 140
           A+ +Q+  CV+  Q P P  PPP P
Sbjct: 145 AQANQRRGCVELQQQPPPPPPPPPP 169


>05_03_0620 -
           16286207-16286342,16286861-16286955,16287051-16287158,
           16287262-16287357,16287446-16287604
          Length = 197

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 259 IRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPP 149
           +R HP   + SS++  RT+ + +C+ H   P P  PP
Sbjct: 26  LRRHPAATTTSSSSGKRTT-RLLCLLH-DTPPPAPPP 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,349,156
Number of Sequences: 37544
Number of extensions: 175929
Number of successful extensions: 444
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)