Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                30   0.51 
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_57898| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.3  
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)                26   8.3  
SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)                 26   8.3  

>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 622

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -2

Query: 135 KNIKRYERQFYMLYFILLISHPRATSRIVRRHFRCQ 28
           KNI+  ER  Y+LYFI     P+ T+   R H RC+
Sbjct: 296 KNIQHLERTVYVLYFIT----PKKTTPHPRPHSRCK 327


>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 223 NTSARTSQKAVCVQHTQHPRPGFPPPLP 140
           N +A+T  +  C      P  GF PPLP
Sbjct: 35  NNAAKTEHQVACQVCKNKPVVGFSPPLP 62


>SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 226 SNTSARTSQKAVCVQHTQHPRPGFPPPLPIK 134
           +NT  R    A C  H +  R G P P+P +
Sbjct: 16  ANTCGRRCMDAYCKVHLKRLRKGIPLPVPCR 46


>SB_51668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 178 TQHPRPGFPPPLPIKKYKT 122
           T  P+PG+P P P  +Y T
Sbjct: 83  TPSPKPGYPTPSPSPRYPT 101


>SB_57898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 250 HPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIKKYKT 122
           HP   S+SSN+ +  +  A+   +      G  P  PI +YKT
Sbjct: 42  HPYYSSLSSNSLSNENPAALDNSYHSRDTHGNSPYAPIAEYKT 84


>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
          Length = 815

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 359 LHTGQPLNQCQKYXIIIPSLT 297
           L TG+PLN  + Y II+P  T
Sbjct: 372 LPTGEPLNGSRSYEIIMPYFT 392


>SB_39578| Best HMM Match : DUF1213 (HMM E-Value=0.032)
          Length = 521

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -1

Query: 295 ETDPRIIPS*RSIRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPG 158
           E  PR  P   S     T +  S NTS  TSQK    +     +PG
Sbjct: 371 EISPRTSPKTSSKTSPKTSLKTSLNTSLNTSQKTSLKRSLNTNKPG 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,886,388
Number of Sequences: 59808
Number of extensions: 207005
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)