Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041329-1|AAH41329.1|  268|Homo sapiens ELL associated factor 1...    29   6.2  
AF272973-1|AAK58687.1|  268|Homo sapiens EAF1 protein.                 29   6.2  
U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated pr...    28   8.2  
U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated pr...    28   8.2  

>BC041329-1|AAH41329.1|  268|Homo sapiens ELL associated factor 1
           protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 262 SIRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIK 134
           SI++  T+   SS   AR  Q+      T  P P  PPP+P +
Sbjct: 105 SIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPP-PPPMPFR 146


>AF272973-1|AAK58687.1|  268|Homo sapiens EAF1 protein.
          Length = 268

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 262 SIRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIK 134
           SI++  T+   SS   AR  Q+      T  P P  PPP+P +
Sbjct: 105 SIQVKKTRAEGSSKIQARMEQQPTRPPQTSQPPPP-PPPMPFR 146


>U38292-1|AAB41133.1| 2805|Homo sapiens microtubule-associated protein
            1a protein.
          Length = 2805

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 187  VQHTQHPRPGF-PPPLP 140
            V  T HPRPG  PPPLP
Sbjct: 2548 VSGTHHPRPGHDPPPLP 2564


>U38291-1|AAB41132.1| 2805|Homo sapiens microtubule-associated protein
            1a protein.
          Length = 2805

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -1

Query: 187  VQHTQHPRPGF-PPPLP 140
            V  T HPRPG  PPPLP
Sbjct: 2548 VSGTHHPRPGHDPPPLP 2564


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,119,240
Number of Sequences: 237096
Number of extensions: 1009766
Number of successful extensions: 2246
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2246
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)