Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1148|AAN12081.1| 2465|Drosophila melanogaster CG32394-P...    28   3.3  
AY119170-1|AAM51030.1|  620|Drosophila melanogaster RH49114p pro...    27   5.8  
AY069251-1|AAL39396.1|  359|Drosophila melanogaster GM02568p pro...    27   5.8  
AE013599-1786|AAZ52807.1|  359|Drosophila melanogaster CG13344-P...    27   5.8  
AE013599-1785|AAF58321.2|  374|Drosophila melanogaster CG13344-P...    27   5.8  
AE013599-768|AAF59002.2|  609|Drosophila melanogaster CG8196-PA ...    27   5.8  

>AE014296-1148|AAN12081.1| 2465|Drosophila melanogaster CG32394-PA
            protein.
          Length = 2465

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -1

Query: 292  TDPRIIPS*RSIRLHPTKVSISSNTSARTSQKAVCVQHTQHPRPGFPPPLPIKKYK 125
            T P  + S  SI       + SSN S  +    + V  T  P P  PP LPI K K
Sbjct: 984  TPPHSMHSGNSIGSTSATAASSSNCSNNSMPTPLPVAVTPTPTPAPPPLLPIPKPK 1039


>AY119170-1|AAM51030.1|  620|Drosophila melanogaster RH49114p
           protein.
          Length = 620

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 366 VVTSYWPAAKSMPKIXYYNTFTYRRPTRVLYHPKGRLGCTRPRYR*VATLVREHHRKRFV 187
           +V SY  AAK + ++  +  +       +L   +  +   RP Y+ +   VR+   K++ 
Sbjct: 192 IVQSYQRAAKIL-EVPVHKLWYRYDSQEMLQQMEQAMTELRPAYQQLHAFVRQELHKKYG 250

Query: 186 SSTRNIRGP-ASHLHYQ 139
           S   N+ GP   HL  Q
Sbjct: 251 SDVVNLNGPIPDHLFQQ 267


>AY069251-1|AAL39396.1|  359|Drosophila melanogaster GM02568p
           protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 220 TSARTSQKAVCVQHTQHPRPGFPPPLPIKK 131
           T     Q+ VCV    HP PG+P   P  K
Sbjct: 25  TGEEEEQQYVCVTLQVHPTPGYPEESPTFK 54


>AE013599-1786|AAZ52807.1|  359|Drosophila melanogaster CG13344-PB,
           isoform B protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 220 TSARTSQKAVCVQHTQHPRPGFPPPLPIKK 131
           T     Q+ VCV    HP PG+P   P  K
Sbjct: 25  TGEEEEQQYVCVTLQVHPTPGYPEESPTFK 54


>AE013599-1785|AAF58321.2|  374|Drosophila melanogaster CG13344-PA,
           isoform A protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -1

Query: 220 TSARTSQKAVCVQHTQHPRPGFPPPLPIKK 131
           T     Q+ VCV    HP PG+P   P  K
Sbjct: 40  TGEEEEQQYVCVTLQVHPTPGYPEESPTFK 69


>AE013599-768|AAF59002.2|  609|Drosophila melanogaster CG8196-PA
           protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -2

Query: 366 VVTSYWPAAKSMPKIXYYNTFTYRRPTRVLYHPKGRLGCTRPRYR*VATLVREHHRKRFV 187
           +V SY  AAK + ++  +  +       +L   +  +   RP Y+ +   VR+   K++ 
Sbjct: 192 IVQSYQRAAKIL-EVPVHKLWYRYDSQEMLQQMEQAMTELRPAYQQLHAFVRQELHKKYG 250

Query: 186 SSTRNIRGP-ASHLHYQ 139
           S   N+ GP   HL  Q
Sbjct: 251 SDVVNLNGPIPDHLFQQ 267


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,634,070
Number of Sequences: 53049
Number of extensions: 301551
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 964005624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)