Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AL132949-30|CAB61109.1|  210|Caenorhabditis elegans Hypothetical...    27   5.5  
Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein pro...    26   7.3  
AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival moto...    26   7.3  

>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 189 VSSTRNIRGPASHLHYQ*KNIKRYERQFYMLYFILLIS 76
           +S T N+  PA  LH+  + +KR    ++   F+ LI+
Sbjct: 55  LSKTSNMSIPAVFLHFYTRRLKRILPMYFFAIFLALIA 92


>AL132949-30|CAB61109.1|  210|Caenorhabditis elegans Hypothetical
           protein Y53F4B.35 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 327 KIXYYNTFTYRRPTRVLYHPKG 262
           K+ Y+N+  Y  P R+L+H  G
Sbjct: 5   KLTYFNSRFYAEPARILFHLAG 26


>Z81048-7|CAC42273.1|  207|Caenorhabditis elegans Hypothetical
           protein C41G7.1b protein.
          Length = 207

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTSQKAVC-VQHTQHPRPGFPPPLP 140
           L  TK + + N+ A ++ K+     +T  P P F PP+P
Sbjct: 126 LQKTKKTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVP 164


>Z81048-6|CAB02838.1|  197|Caenorhabditis elegans Hypothetical
           protein C41G7.1a protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTSQKAVC-VQHTQHPRPGFPPPLP 140
           L  TK + + N+ A ++ K+     +T  P P F PP+P
Sbjct: 116 LQKTKKTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVP 154


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 172 HPRPGFPPPLPIKKYKT 122
           HP P  PPP+P  +++T
Sbjct: 942 HPSPPVPPPIPAIRHRT 958


>Y17255-1|CAB41945.1|  197|Caenorhabditis elegans SMN protein
           protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTSQKAVC-VQHTQHPRPGFPPPLP 140
           L  TK + + N+ A ++ K+     +T  P P F PP+P
Sbjct: 116 LQKTKKTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVP 154


>AF156887-1|AAF00192.1|  207|Caenorhabditis elegans survival motor
           neuron protein protein.
          Length = 207

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 253 LHPTKVSISSNTSARTSQKAVC-VQHTQHPRPGFPPPLP 140
           L  TK + + N+ A ++ K+     +T  P P F PP+P
Sbjct: 126 LQKTKKTSTVNSVAHSNSKSTSSAPNTSMPFPSFAPPVP 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,950,446
Number of Sequences: 27780
Number of extensions: 149814
Number of successful extensions: 375
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)