Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0297
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   8.1  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   8.1  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   8.1  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   8.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   8.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = -1

Query: 208 TSQKA-VCVQHTQHPRPGFPPPLP 140
           T QK  +  Q +Q P  G P P P
Sbjct: 2   TQQKQPIITQQSQQPSSGAPGPQP 25



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 229 SSNTSARTSQKAVCVQHTQHPRPGFPPPLP 140
           S + S +  Q+      +Q P PG PP  P
Sbjct: 26  SPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -3

Query: 215 CANITESGLCPAHATSAARLPTST 144
           C    + GLCP       R+P  T
Sbjct: 446 CCFAQDDGLCPYTLKHKIRVPPGT 469


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 239 LGRVQPNRPLGWYNTR 286
           LG  +   P+G+Y TR
Sbjct: 175 LGEWEKRAPMGFYGTR 190


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 239 LGRVQPNRPLGWYNTR 286
           LG  +   P+G+Y TR
Sbjct: 175 LGEWEKRAPMGFYGTR 190


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 239 LGRVQPNRPLGWYNTR 286
           LG  +   P+G+Y TR
Sbjct: 175 LGEWEKRAPMGFYGTR 190


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -2

Query: 354 YWPAAKSMPKIXYYNTFTYRRPTRVLY 274
           YWP  K++     ++   Y R  R  Y
Sbjct: 143 YWPRGKNLGGTTLHHGMAYHRGHRKDY 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,889
Number of Sequences: 438
Number of extensions: 2071
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)