Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0295
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine rece...    30   1.1  
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    30   1.1  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    29   1.9  
U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine rece...    28   4.3  
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23179-6|AAK68205.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 1 protein.
          Length = 341

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 79  FNDC--SFVNFPLTFF--FNSYLWIRLLVRVRHVFCNVI 183
           FND   SF+  P T    FNSY WI L   + ++ CN I
Sbjct: 166 FNDSFISFILIPATTAQTFNSYCWILLYAELGNLLCNCI 204


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 58  FKNIRFFFNDCSFVNFPLT--FFFNSYLWIRLLVRVRHVFCNVIF*IF 195
           F++ +F  +  SF+  P T    FN+YLW  L  ++ +  CN +  IF
Sbjct: 163 FRDEQFTDSFISFLVLPNTPAVQFNNYLWFLLYAKIGNFCCNCVLLIF 210


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +1

Query: 85  DCSFVNF---PLT--FFFNSYLWIRLLVRVRHVFCNVI 183
           D  F+NF   P T    FNS+LW  L +++ +  CN+I
Sbjct: 169 DKPFINFILVPATSALQFNSFLWYMLYLKITNFICNLI 206


>U23179-5|AAK68210.2|  347|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 58  FKNIRFFFNDCSFVNFPLTFF--FNSYLWIRLLVRVRHVFCNVIF 186
           F++ +F  +  SF   P T    FNSY W  L   + +  CN IF
Sbjct: 167 FRDEKFEDSFISFALVPETSAIPFNSYFWELLYAEIGNFICNCIF 211


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 58  FKNIRFF-FNDCSFVNFPLTFFFNSYLWIRLLVRVRHVFCNV 180
           F N +F    + SF N  LT F N  +W+   VRV+   CN+
Sbjct: 160 FVNSKFAEIYESSFQNVFLTLFDNGTVWVNYRVRVKGA-CNM 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,544,449
Number of Sequences: 27780
Number of extensions: 172003
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)