Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0295
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.0  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 172 KIHASLVRAVLSINNY*KKMSKENSRMNNH*KKNVY 65
           KI +SL    +  NNY    +  N   NN+ KK  Y
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 172 KIHASLVRAVLSINNY*KKMSKENSRMNNH*KKNVY 65
           KI +SL    +  NNY    +  N   NN+ KK  Y
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYY 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = +1

Query: 190  IFDCHCCFSKSRASYVXSRXVLKL 261
            ++DC+ C+S +   +V     ++L
Sbjct: 1065 LYDCYVCYSPNDEDFVLHSLAVEL 1088


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +3

Query: 504 HWKHCP 521
           HW HCP
Sbjct: 472 HWHHCP 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,421
Number of Sequences: 438
Number of extensions: 2098
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)