Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0295
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418    29   3.0  

>At3g45140.1 68416.m04872 lipoxygenase (LOX2) identical to SP|P38418
          Length = 896

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 149 SSLIHK*LLKKNVKGKFTNEQSLKKKRIFLNASH 48
           +SLI   ++++ VKG  T +++LK KR+F+   H
Sbjct: 434 TSLITWEIVEREVKGNMTVDEALKNKRLFVLDYH 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,388
Number of Sequences: 28952
Number of extensions: 147434
Number of successful extensions: 266
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)