Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0291
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052... 31 0.83
01_01_0227 + 1933247-1933699 30 1.5
06_01_0258 - 1913408-1913506,1913593-1913631,1913720-1913859,191... 29 1.9
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 3.4
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 28 4.4
12_01_0971 - 9781887-9781924,9782036-9782247,9782327-9784114,978... 28 5.9
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 27 7.7
03_05_0488 - 24847076-24847220,24847823-24847872,24848139-248482... 27 7.7
>02_03_0235 -
16702768-16702956,16703956-16704492,16705084-16705233,
16705310-16705625,16707005-16707286,16707895-16707971,
16708121-16708186,16708700-16709246,16709435-16709565,
16709642-16709746,16709859-16710039,16710123-16710185,
16711000-16711109,16711576-16711638,16711859-16712191
Length = 1049
Score = 30.7 bits (66), Expect = 0.83
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Frame = +2
Query: 101 TAFAIRTSDWRLLRTIS*RPSSRQRCPEITTGRGSRWRWPI--ETSVPPSPRIRQIPG-- 268
TA A R W + +R R P RW WP S PP PR PG
Sbjct: 3 TALASRVESWARDQAARLPAWARPRPPSAAAAAVPRWPWPWPWSWSWPPPPRAPAWPGDR 62
Query: 269 QLXRSTLFAEE 301
+ R F EE
Sbjct: 63 RRQRERAFREE 73
>01_01_0227 + 1933247-1933699
Length = 150
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 335 VEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTVIXSQE 487
V+GK++ER +F RR LP D V + + +GVLTV +E
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMD-NGVLTVTVPKE 136
>06_01_0258 -
1913408-1913506,1913593-1913631,1913720-1913859,
1914148-1914154,1914270-1914440,1914541-1914712,
1915367-1915741,1915892-1915910,1916508-1916581,
1916744-1916937
Length = 429
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 197 RGSRWRWPIETSVPPSPRIRQIP 265
R +R RWP+ PPSP R +P
Sbjct: 14 RSARRRWPLAVRRPPSPAARLLP 36
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Frame = +3
Query: 42 RILK*SKNVSAAIHPGIPTEPPSRSGL-------RTGAYSGRSPDGRHHANDVQRL 188
R++K + I P + PPSRS R+ + G S +HH +D Q L
Sbjct: 811 RVVKDQSSSELRIKPKVADRPPSRSSRSHSIGTDRSSTHEGSSHSKKHHEHDSQSL 866
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Frame = +2
Query: 287 LFAEEISVKTADGYVIVEGKHEERQDE------HGYIXRQ----FTRRSALPENCNPDTV 436
L EE+ V D +++ G+H++ + E G+ + + R ALP+ C+ V
Sbjct: 153 LSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKV 212
Query: 437 ESRLSYDGVLTV 472
+ L +GVL V
Sbjct: 213 RAELK-NGVLLV 223
>12_01_0971 -
9781887-9781924,9782036-9782247,9782327-9784114,
9784630-9785432
Length = 946
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/66 (25%), Positives = 26/66 (39%)
Frame = +2
Query: 215 WPIETSVPPSPRIRQIPGQLXRSTLFAEEISVKTADGYVIVEGKHEERQDEHGYIXRQFT 394
W + P + I R+T AE S T++GY+ EE+ + + R F
Sbjct: 282 WKVVNCAFPENNLGSIIITTTRNTAVAEACSRTTSEGYLHSMQPLEEQDSQRLFYRRAFN 341
Query: 395 RRSALP 412
S P
Sbjct: 342 SESCCP 347
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 93 PTEPPSRSGLRTGAYSGRSPDGRHHANDVQRLLPAVEADGD 215
P + G R A P+G A D + L+ E+DG+
Sbjct: 60 PRRSGAEQGARRAAAGSEKPEGSEEAEDEEFLVEEYESDGE 100
>03_05_0488 -
24847076-24847220,24847823-24847872,24848139-24848278,
24848358-24848493,24848584-24848683,24848837-24848949,
24849034-24849132,24849227-24849311,24849799-24850037,
24850202-24850372,24850544-24850784,24850899-24851172,
24851481-24851660,24852170-24852251,24852336-24852437,
24853315-24853384,24853725-24853824,24853931-24854025,
24854105-24854184,24854361-24854439,24854603-24854663,
24855570-24855984
Length = 1018
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 197 RGSRWRWPIETSVPPSPR 250
R RW W I V PSPR
Sbjct: 312 RDGRWEWAIAPGVSPSPR 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,714,034
Number of Sequences: 37544
Number of extensions: 271028
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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