Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0291
(560 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 50 1e-06
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 47 1e-05
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 43 1e-04
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 43 1e-04
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 42 5e-04
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 40 0.001
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 39 0.003
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.64
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 31 0.85
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36) 28 4.5
SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5) 28 4.5
SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07) 28 6.0
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 28 6.0
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 7.9
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS+K G + ++GKH+ + EHGY +F R LP+ + TV SR++ DG+L +
Sbjct: 53 EEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHI 110
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/59 (40%), Positives = 35/59 (59%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G V V+G+H + E G+ ++F R LPE +P+ V SR+S G L +
Sbjct: 20 EEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHGHLHI 77
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G+V V+G+H + G+ ++F R ALPE V++R+S G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQLHI 77
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G+V V+G+H + G+ ++F R ALPE V++R+S G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQLHI 77
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G+V V+G+H + G+ ++F R LPE V++R+S G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHI 77
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G+V V+G+H + G+ ++F R LPE V++R+S G L +
Sbjct: 254 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHI 311
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G+V V+G+H + G+ ++F R LPE V++R+S G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHI 77
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEIS K +G V V+G+H + G+ ++F R LPE V++R+S G L +
Sbjct: 21 EEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHI 78
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EEI+ K +G + V G + + E G+ ++F R LPE + ++ +R++ DG+L V
Sbjct: 19 EEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDGMLHV 76
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 296 EEISVKTADGYVIVEGKHEERQDEHGYIX-RQFTRRSALPENCNPDTVESRLSYDGVLTV 472
EE+ VK + V + E +EHG+ RQF R LP + DT+ RL DGVL +
Sbjct: 112 EEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTLVPRLGKDGVLYI 169
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.1 bits (67), Expect = 0.64
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 344 KHEERQDEHGYIXRQFTRRSAL 409
KHEER+D HGY+ + T + AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 338 EGKHEERQDEHGYIXRQFTRRSALPENCNPDTVESRLSYDGVLT 469
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 308 VKTADGYVIVEGKHEERQDEHGYIXRQFTRRSALPE 415
+++A GYV+ G H + + G + + R+ LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
Length = 1065
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = -3
Query: 186 ISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEW---QQRHFYFTLGCEISSDITVR 16
+ +WR D R I+RS++ + V LVS D + QR + T+G S+ + ++
Sbjct: 383 LEDEQWRVDFRDVIIRSRQMGS--LRSQVSLVSTDSFDNINQRQIFTTVGIYKSNMVAIK 440
>SB_51330| Best HMM Match : C1_3 (HMM E-Value=2.5)
Length = 506
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 230 SVPPSPRIRQIPGQLXRSTLFAEEISVKTADGYVIVEGKHEERQDE 367
S P+P+I+++P + + + E + V TAD + E + E+ QD+
Sbjct: 60 STKPNPQIQELPQPVIYTAICVERLPVVTADKSEL-EKRFEKLQDQ 104
>SB_18848| Best HMM Match : WD40 (HMM E-Value=5.5e-07)
Length = 508
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 350 EERQDEHGYIXRQFTRRSALPENCNP 427
+ R+D HG++ R T + L C+P
Sbjct: 249 QSRRDHHGHVDRALTNGAGLGNKCSP 274
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/66 (22%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +2
Query: 293 AEEISVKTADGYVIVEGKHEERQDEHGYIX-RQFTRRSALPENCNPDTVESRLSYDGVLT 469
A+++S++ +I++G+ ++ D G+ RQF R P++ + ++++ L Y +L
Sbjct: 111 AKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKSTDMKSIKATLKYGDILE 168
Query: 470 VIXSQE 487
+ +E
Sbjct: 169 IEAQKE 174
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 87 GIPTEPPSRSGLRTGAYSGRS-PDGRH 164
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 76 PFILGYQPNRLRDQDFGLALTPDDLLTAVI-TPTMSRDYYRPW 201
PF +G+ N++ + F PD L +I TP M ++P+
Sbjct: 34 PFKIGWYNNQVTHKQFQFPFDPDTLAFVIISTPEMFEKGFKPF 76
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 246 GDGGTDVSIGHRHLLPRPVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 67
G G + S G + + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,116
Number of Sequences: 59808
Number of extensions: 282180
Number of successful extensions: 719
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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