Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0291
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.1  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 185 ITTGRGSRWRWPIETSVPPSPRIRQIP 265
           I TG       P+  S+PP P  + +P
Sbjct: 748 IQTGANVNLWQPLSVSIPPPPSAQNVP 774


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
 Frame = +3

Query: 60  KNVSAAIHPGIPTEPPSRSGLRTGAYSGRSPDGRHHAN---------DVQRLLPAVEADG 212
           + V A++ P  P  P   S     AY+    D   H           D + LLP V   G
Sbjct: 172 QTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWVGG 231

Query: 213 DGQ*RRRFHHHLE 251
           + +   R   HLE
Sbjct: 232 ESEALARLERHLE 244


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 80  NGSRDIFTLL*DAKYQVI 27
           NGS D F    D K+QV+
Sbjct: 718 NGSLDTFLRANDGKFQVL 735


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,316
Number of Sequences: 438
Number of extensions: 2519
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)