Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0288
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   3.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.0  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   5.3  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.0  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   9.3  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 63   KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 164
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 372 CQFGLKFFAFVKDRFAFMGLFKIARIF-CLDFYL 470
           C FGL FF ++   ++  G F    +F  L+FY+
Sbjct: 22  CVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYI 55


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 114 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 212
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 326 LWSLQSGSTNKTKTYVNLNTVVTISLIPRNASSIFS 219
           L+ + S  TNK +  +NLN ++     PR  S+ FS
Sbjct: 109 LFDILSARTNK-RGQINLNHLLNFQFTPRTNSNAFS 143


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 KLHSQPITGMTIFFAIFPNVSSA*NSLPSLKTDLRLWDF 432
           KL++ P  G  +  +I    SS+  S+P+  T   LW F
Sbjct: 262 KLNNVPYKGSILEVSIKNKASSSVKSIPTTPTGESLWPF 300


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 465 YLPIKNFSPNLFDSNKLD 518
           YLP +N++P   + NKLD
Sbjct: 201 YLPSQNYTPPSLEPNKLD 218


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 440 DLKKSHKRKSV 408
           DL+KSHKRKSV
Sbjct: 154 DLRKSHKRKSV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,169
Number of Sequences: 5004
Number of extensions: 47133
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)