Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0288
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    28   7.2  
11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220...    27   9.6  
04_04_0381 - 24839505-24839918,24840009-24840779,24841369-248417...    27   9.6  

>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 377 LTLGKIAKNMVIP--VIGWL-WSLQSGSTNKTKTYVNLNTVVTISLIP 243
           LTLG I+K  V+P   +GW+  S  +G   +TK   ++ + + IS  P
Sbjct: 291 LTLGSISKRWVVPGWRLGWIVTSDPNGVFQRTKVVESIQSYLDISADP 338


>11_01_0293 +
           2207782-2208148,2208515-2208567,2208622-2208698,
           2209377-2209772,2209953-2210111,2210522-2210933
          Length = 487

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = -3

Query: 461 IQTKNSCDLKKSHKRKSVFNEGKEF*AELTLGKIAKNMVIPVIGWLWSLQSGSTNKTKTY 282
           + T +  + +K+ +  + F EG     ++T+G   K  +  + GWL        N +KT+
Sbjct: 284 LNTGHWWNYEKTIRSGTYFQEGDAVKMDMTVGDAYKRSIQTLFGWL----HNEVNSSKTH 339

Query: 281 VNLNTVVTI 255
           V   T   +
Sbjct: 340 VIFRTYAPV 348


>04_04_0381 -
           24839505-24839918,24840009-24840779,24841369-24841730,
           24842452-24842830
          Length = 641

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 269 TVVTISLIPRNASSIFSVLMFSVFGY 192
           T  T   +P+NA + +S+L FSVF +
Sbjct: 368 TFATDPRLPKNAKAFYSILDFSVFSW 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,280
Number of Sequences: 37544
Number of extensions: 255240
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)