Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0288
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027)                    29   2.4  
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)                   29   3.2  
SB_16710| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   29   4.2  
SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)                      28   5.6  
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)                 28   7.4  
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.8  

>SB_22681| Best HMM Match : PAN (HMM E-Value=0.0027)
          Length = 329

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 267 CGYY*FDSPQCFKY 226
           CG Y FDSP+CF Y
Sbjct: 68  CGSYCFDSPECFSY 81


>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
          Length = 372

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 128 VYLFGVFLDEIIDSSFSVAFKLLVSRED 45
           VY+F  FLDE +     +A KLLV  E+
Sbjct: 137 VYVFAKFLDERLKRKIQIATKLLVKHEN 164


>SB_16710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 350 MVIPVIGWLWSLQSGSTNKTKTYVNLNTVVTISLIPRNASSIF 222
           +VI V+   WSL+S +T++ + ++      TISL  R     F
Sbjct: 417 VVIDVVANKWSLKSNTTSQGENFMKEKQTTTISLTYRKVKVYF 459


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 137 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 12
           F+R+ + GVF +E++ S       ++V  E  DEHL RL +V
Sbjct: 807 FQRL-MQGVFREELLQSMMVYLDDIIVFAESIDEHLRRLEVV 847


>SB_6907| Best HMM Match : PAN (HMM E-Value=0.019)
          Length = 324

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 267 CGYY*FDSPQCFKY 226
           CG Y FD+P+CF Y
Sbjct: 59  CGSYCFDTPECFSY 72


>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
          Length = 759

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +3

Query: 450 FCL---DFYLPIKNFSPNLFDSNKLDXRWG*YHFLPH 551
           FCL   DF L + N+  N  D+N+     G YHF PH
Sbjct: 162 FCLIMVDFNLNLLNYDSNS-DTNEFVNSLGAYHFHPH 197


>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1356

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 137 FRRVYLFGVFLDEIIDSSFSVAFKLLVSREDPDEHLMRLFLV 12
           F+R+ + GVF  E++ S       ++V  E  DEHL RL +V
Sbjct: 562 FQRL-MQGVFRKELLQSMMVYLDDIIVFAESIDEHLRRLEVV 602


>SB_7193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 372

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 128 VYLFGVFLDEIIDSSFSVAFKLLVSRED 45
           VY+F  FLD+ +     +A KLLV  E+
Sbjct: 137 VYVFAKFLDKRLKRKIQIATKLLVKHEN 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,059,771
Number of Sequences: 59808
Number of extensions: 314902
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)