Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0288
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    29   2.8  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical...    27   8.6  

>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 15  KKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSK 119
           K  S  V+  + SRN+KLE   + A+D+F++  SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 305 STNKTKTYVNLNTVVTISLIPRNASSIFSVLMFSVFGYHAG 183
           +TN T    N     +IS IP N +S+   L  SV  + AG
Sbjct: 240 NTNNTDNTSNTTQGSSISFIPSNTNSLIDSLKLSVGSFQAG 280


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 45  ILSRNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTS 182
           I  R + + G A    D+F+K+  +E     LVH D  +  CKFTS
Sbjct: 68  IEERVRVIFGFAAVVSDDFLKQIQRE----GLVHLDKKKRICKFTS 109


>AF047659-13|AAK82908.1|  503|Caenorhabditis elegans Hypothetical
           protein K07H8.2b protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 317 LQSGSTNKTKTYVNLNTVVTISLIPRNASSIFSVLMFSVFGYHAGAGK-FAGFL 159
           +   S+ K++TY + N +V +S+IP  +S +    +   F   AG G  FAG +
Sbjct: 55  MNENSSLKSRTYDHSNDLVNMSVIPAESSYVLFFQVLFPFAV-AGLGMVFAGLV 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,031,060
Number of Sequences: 27780
Number of extensions: 248176
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)