Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0287
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866...    28   5.7  

>04_04_0915 -
           29385926-29385952,29386069-29386285,29386367-29386622,
           29386745-29387072,29387157-29387587,29388014-29388163,
           29388212-29388398,29388709-29388750,29389007-29389555,
           29389778-29390032
          Length = 813

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 127 F*FASLIGRIPVTINYLSNYLEKITHRILDQTY 29
           F    L+ RIP T    SNY    T+ +L++T+
Sbjct: 80  FQLLKLVKRIPETFTSSSNYFNSFTYPLLEETH 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,828,741
Number of Sequences: 37544
Number of extensions: 264230
Number of successful extensions: 465
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)