Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0287
         (657 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070525-1|AAL47996.1|  316|Drosophila melanogaster GH26994p pro...    31   1.8  
AE013599-2785|AAF57624.1|  316|Drosophila melanogaster CG15084-P...    31   1.8  

>AY070525-1|AAL47996.1|  316|Drosophila melanogaster GH26994p
           protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -1

Query: 264 TLRSYGIIPRREKLESLLGYQQIG--REKERHNLLIQSNDK*ISIIGDFNS 118
           T+ ++G + R++ L + L  Q +G  R+K        +N+K IS++GD++S
Sbjct: 259 TVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKPISLVGDYSS 309


>AE013599-2785|AAF57624.1|  316|Drosophila melanogaster CG15084-PA
           protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = -1

Query: 264 TLRSYGIIPRREKLESLLGYQQIG--REKERHNLLIQSNDK*ISIIGDFNS 118
           T+ ++G + R++ L + L  Q +G  R+K        +N+K IS++GD++S
Sbjct: 259 TVTTFGGLKRQKVLNTQLQVQDLGIRRKKLEETTSSATNEKPISLVGDYSS 309


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,596,040
Number of Sequences: 53049
Number of extensions: 469207
Number of successful extensions: 1021
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)