Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0287
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.8  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 267 DTLRSYGIIPRREKLESLLGYQQIGREKER 178
           D +R +G +P+REK   L   QQ    + +
Sbjct: 136 DAVR-FGRVPKREKARILAAMQQSSHSRSQ 164


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 240 ELCHTNVTYQHHFLIIDN*NALYP 311
           EL   NV ++H   I D  N +YP
Sbjct: 1   ELKQINVIFRHGDRIPDEKNEMYP 24


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 240 ELCHTNVTYQHHFLIIDN*NALYP 311
           EL   NV ++H   I D  N +YP
Sbjct: 16  ELKQINVIFRHGDRIPDEKNEMYP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,972
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)